Factsheet for GSMUA_AchrUn_randomP24180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g01900.t01	Wine grape	cytosol	84.04	84.04
PGSC0003DMT400016257	Potato	nucleus	81.91	82.8
Os05t0458100-01	Rice	nucleus	81.91	82.8
KRG97894	Soybean	cytosol	82.45	82.45
EES19645	Sorghum	nucleus	81.38	82.26
Solyc04g011620.2.1	Tomato	nucleus	81.38	82.26
KRH30990	Soybean	cytosol	81.91	81.91
Os01t0844300-01	Rice	nucleus	77.66	78.92
Bra007173.1-P	Field mustard	nucleus	77.66	76.84
CDY40236	Canola	nucleus	77.66	76.84
CDY41214	Canola	nucleus	77.66	76.84
AT3G55520.1	Thale cress	nucleus	76.6	75.79
TraesCS1D01G282500.1	Wheat	nucleus	79.79	74.26
TraesCS1B01G292400.1	Wheat	nucleus	78.72	73.27
Zm00001d038368_P002	Maize	extracellular	83.51	62.55
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	80.32	54.91
GSMUA_Achr5P05550_001	Banana	cytosol, mitochondrion, plastid	15.43	23.97
GSMUA_Achr10P...	Banana	cytosol	37.23	12.46
GSMUA_Achr7P22780_001	Banana	cytosol	36.17	12.39
GSMUA_Achr6P27770_001	Banana	cytosol	35.64	11.59
GSMUA_AchrUn_...	Banana	cytosol	35.64	11.53
GSMUA_Achr6P12690_001	Banana	cytosol	16.49	8.29
GSMUA_Achr8P04930_001	Banana	cytosol	26.6	7.87
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	22.87	6.89

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	ncoils:Coil	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	EnsemblPlantsGene:GSMUA_AchrUn_randomG24180_001	EnsemblPlants:GSMUA_AchrUn_randomP24180_001	EnsemblPlants:GSMUA_AchrUn_randomT24180_001	InterPro:IPR001179	UniProt:M0UBX6
PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326
SUPFAM:SSF54534	UniParc:UPI0002956BF7	SEG:seg	:	:	:

Description

Putative Peptidyl-prolyl cis-trans isomerase FKBP4 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24180_001]

Coordinates

chrchrUn_random:+:120088903..120098625

Molecular Weight (calculated)

20255.4 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.412

Length

188 amino acids

Sequence
(BLAST)

001: MGDMIDLSGD GGLLKTIIRK AKIDALAPSE SLPLVDVHYE GTLAETGEVF DSTHEDNTVF SFEIGSGTVI KAWDIALRTM KVGEVAKITC KPDYAYGSAG
101: SPPDIPPNAT LVFEVELVAC RPRKGASLSS VSDEKARLLE LKKQREMIAA SKEEEKKKRE EAKAAAAARI QAKLESKKHQ GKGKGKAK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.