Factsheet for Os01t0844300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21087465

gfp PMID: 21087465 doi

JC Ahn, DW Kim, YN You, MS Seok, JM Park, H Hwang, BG Kim, S Luan, HS Park, HS Cho

Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0458100-01	Rice	nucleus	84.86	84.41
VIT_13s0019g01900.t01	Wine grape	cytosol	80.0	78.72
Solyc04g011620.2.1	Tomato	nucleus	78.92	78.49
PGSC0003DMT400016257	Potato	nucleus	78.92	78.49
KRG97894	Soybean	cytosol	79.46	78.19
GSMUA_AchrUn_...	Banana	nucleus	78.92	77.66
KRH30990	Soybean	cytosol	77.84	76.6
AT3G55520.1	Thale cress	nucleus	76.76	74.74
CDY41214	Canola	nucleus	76.22	74.21
Bra007173.1-P	Field mustard	nucleus	75.68	73.68
CDY40236	Canola	nucleus	75.68	73.68
Os02t0760300-01	Rice	extracellular	23.24	38.39
Os04t0352400-01	Rice	mitochondrion, plasma membrane	35.14	11.11
Os08t0525600-01	Rice	cytosol, extracellular, plasma membrane, plastid	34.05	10.86
Os11t0148300-01	Rice	cytosol	20.54	10.13
Os02t0491400-01	Rice	plasma membrane	36.22	9.82
Os12t0145500-01	Rice	cytosol	19.46	9.73
Os01t0564300-01	Rice	cytosol, plasma membrane	21.08	9.24
Os01t0563000-04	Rice	plasma membrane	24.86	7.06
Os03t0367000-01	Rice	plasma membrane	23.24	6.8
Os01t0562400-01	Rice	mitochondrion	19.46	6.25

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EntrezGene:4327507	EMBL:AK105246	ProteinID:BAD81746.1	ProteinID:BAF06693.1
ProteinID:BAS75184.1	ncoils:Coil	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	EnsemblPlantsGene:Os01g0844300	EnsemblPlants:Os01t0844300-01	PFAM:PF00254	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	UniProt:Q5N9W0	SUPFAM:SSF54534
UniParc:UPI000049E87D	RefSeq:XP_015640569.1	RefSeq:XP_015640575.1	SEG:seg	:	:

Description

FK506 binding protein 20-1bSimilar to Peptidylprolyl isomerase. (Os01t0844300-01)

Coordinates

chr1:+:36253547..36256956

Molecular Weight (calculated)

20133.9 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.546

Length

185 amino acids

Sequence
(BLAST)

001: MSETIDLTGD RCILKTVIRR AKDDATAPSD SLPIVDVHYE GTLAENGEVF DTTHEDNSVF SFEIGEGTVI KAWDIAVKTM KVGEVAKITC KPEYAYGAAG
101: SPPEIPPDAT LTFEVELIAC RPRKGSSVES VSEEKARLEE LKKQREIAAA AKEEEKRKRE EAKAAAAARV QAKLEAKKGK GKKAK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.