Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55520.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT3G55520.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007173.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY41214 | Canola | nucleus | 98.42 | 98.42 |
| AT3G55520.1 | Thale cress | nucleus | 92.11 | 92.11 |
| Solyc04g011620.2.1 | Tomato | nucleus | 77.37 | 79.03 |
| PGSC0003DMT400016257 | Potato | nucleus | 77.37 | 79.03 |
| VIT_13s0019g01900.t01 | Wine grape | cytosol | 77.89 | 78.72 |
| Os05t0458100-01 | Rice | nucleus | 76.84 | 78.49 |
| KRG97894 | Soybean | cytosol | 77.37 | 78.19 |
| KRH30990 | Soybean | cytosol | 76.84 | 77.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 76.84 | 77.66 |
| EES19645 | Sorghum | nucleus | 75.79 | 77.42 |
| Os01t0844300-01 | Rice | nucleus | 73.68 | 75.68 |
| TraesCS1D01G282500.1 | Wheat | nucleus | 74.74 | 70.3 |
| TraesCS1B01G292400.1 | Wheat | nucleus | 74.74 | 70.3 |
| Zm00001d038368_P002 | Maize | extracellular | 76.32 | 57.77 |
| HORVU1Hr1G072570.7 | Barley | cytosol, nucleus, plastid | 75.79 | 52.36 |
| CDY46798 | Canola | cytosol | 16.84 | 43.24 |
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 23.16 | 39.29 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 21.58 | 36.61 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 21.05 | 35.71 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 22.11 | 32.56 |
| CDY31323 | Canola | extracellular | 19.47 | 28.03 |
| CDY15104 | Canola | cytosol | 28.42 | 19.49 |
| CDY02979 | Canola | mitochondrion | 11.05 | 17.8 |
| CDX85348 | Canola | cytosol | 37.89 | 12.63 |
| CDX86295 | Canola | cytosol | 37.89 | 12.57 |
| CDY15103 | Canola | cytosol | 35.26 | 12.01 |
| CDY52281 | Canola | cytosol | 34.74 | 11.83 |
| CDY34049 | Canola | cytosol | 5.26 | 9.9 |
| CDX73664 | Canola | cytosol | 18.42 | 9.38 |
| CDX78057 | Canola | cytosol | 16.84 | 9.04 |
| CDY29061 | Canola | cytosol | 16.32 | 8.68 |
| CDX90622 | Canola | cytosol | 17.89 | 8.61 |
| CDY15096 | Canola | cytosol | 28.95 | 7.8 |
| CDX76177 | Canola | cytosol | 23.16 | 6.95 |
| CDY13167 | Canola | cytosol | 23.16 | 6.85 |
| CDY00829 | Canola | cytosol | 12.63 | 6.72 |
| CDX67584 | Canola | cytosol | 22.11 | 6.47 |
| CDY07563 | Canola | cytosol | 21.58 | 6.39 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 7.89 | 5.6 |
| CDY00831 | Canola | cytosol | 4.21 | 4.21 |
Protein Annotations
| MapMan:18.12.2 | Gene3D:3.10.50.40 | GO:A0A078HRA9 | UniProt:A0A078HRA9 | EnsemblPlants:CDY40236 | ProteinID:CDY40236 |
| ProteinID:CDY40236.1 | ncoils:Coil | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00069387001 | InterPro:IPR001179 | PFAM:PF00254 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom | PFscan:PS50059 |
| PANTHER:PTHR10516 | PANTHER:PTHR10516:SF326 | SUPFAM:SSF54534 | UniParc:UPI0002542A95 | SEG:seg | : |
Description
BnaA09g35180DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078HRA9]
Coordinates
chrLK032466:+:219397..220789
Molecular Weight (calculated)
20343.2 Da
IEP (calculated)
8.668
GRAVY (calculated)
-0.537
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDEIDLSGD GGVLKQIVRR AKPDAIAPSD DFPVVDVHYE GVLAEDGKVF DTTREDNLVF SFELGSGSVI RSWDIALKTM KVGEVAKLTC KPEYAYGSGG
101: SPPDIPPNAT LIFEVELVAC RPRKGASVGS VSEDRARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGQ GKGKGKGKSK
101: SPPDIPPNAT LIFEVELVAC RPRKGASVGS VSEDRARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGQ GKGKGKGKSK
001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK
Arabidopsis Description
FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.