CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	CDX70995	AT5G22290.1	16803883
AT3G54010.1	CDX88803	AT5G22290.1	16803883
AT3G54010.1	CDX92368	AT5G22290.1	16803883
AT3G54010.1	CDY09128	AT5G22290.1	16803883
AT3G54010.1	CDY35676	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67584	Canola	cytosol	93.61	92.6
CDX76177	Canola	cytosol	89.25	90.52
CDY13167	Canola	cytosol	89.88	89.88
AT3G54010.1	Thale cress	cytosol	87.23	88.19
KRH62430	Soybean	cytosol	68.07	70.26
KRH75755	Soybean	cytosol, endoplasmic reticulum	67.76	69.94
VIT_08s0007g01460.t01	Wine grape	nucleus	67.29	69.68
Solyc11g011420.1.1	Tomato	cytosol, plastid	62.31	68.49
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	60.9	64.42
TraesCS1D01G192100.3	Wheat	cytosol	62.31	64.1
TraesCS1A01G184600.1	Wheat	cytosol	62.15	63.94
Os03t0367000-01	Rice	plasma membrane	62.46	63.45
EER94808	Sorghum	cytosol	61.68	62.86
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	60.44	62.18
Zm00001d047426_P003	Maize	cytosol	61.99	60.67
HORVU4Hr1G042800.9	Barley	cytosol	59.5	57.53
CDY34049	Canola	cytosol	4.83	30.69
CDY52281	Canola	cytosol	26.01	29.93
CDY15103	Canola	cytosol	26.01	29.93
CDY46798	Canola	cytosol	3.43	29.73
CDY15104	Canola	cytosol	12.77	29.6
CDX85348	Canola	cytosol	25.55	28.77
CDY58272	Canola	cytosol, mitochondrion, plastid	4.98	28.57
CDX84517	Canola	cytosol, mitochondrion, plastid	4.98	28.57
CDX86295	Canola	cytosol	25.08	28.1
CDX81222	Canola	cytosol, mitochondrion, plastid	4.67	26.79
CDY18714	Canola	endoplasmic reticulum, extracellular	4.98	24.81
CDY00831	Canola	cytosol	7.01	23.68
CDY64639	Canola	endoplasmic reticulum, extracellular	9.03	21.64
CDY40236	Canola	nucleus	6.39	21.58
CDY41214	Canola	nucleus	6.39	21.58
CDX78057	Canola	cytosol	11.68	21.19
CDX73664	Canola	cytosol	12.31	21.18
CDY29061	Canola	cytosol	11.68	21.01
CDX90622	Canola	cytosol	12.46	20.25
CDY31323	Canola	extracellular	3.89	18.94
CDY00829	Canola	cytosol	9.97	17.93
CDY15096	Canola	cytosol	17.29	15.74
CDY02979	Canola	mitochondrion	2.65	14.41

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078F7G2	UniProt:A0A078F7G2	EnsemblPlants:CDY07563
ProteinID:CDY07563	ProteinID:CDY07563.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0006629	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016853	GO:GO:0019538	GO:GO:0030154	GO:GO:0042761	GO:GO:0048513	GO:GO:0099402
EnsemblPlantsGene:GSBRNA2T00124631001	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PAS1
PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293
PANTHER:PTHR10516	PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	TMHMM:TMhelix
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE3E92	SEG:seg	:

Description

BnaC06g15010DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078F7G2]

Coordinates

chrLK031979:-:675402..679538

Molecular Weight (calculated)

72402.6 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.554

Length

642 amino acids

Sequence
(BLAST)

001: MDAAEQNHLL PKKKKSETED DKRRKRIVPG SLLKAVVRPG GGDSSPKDGD QIIYHCTVRT LDGVVVESTR SECGGRGLPI RDVLGKSKMI LGLLEGIPTM
101: HKAEIAMFKM KPEMHYAEKD CPVSAPGNFP KYDELHFEIE LLDFAKAKAR SHHQTKITIA SDDLGVVKKI VNEGEGWESP REPYEVKARI SAKSGDGQVL
201: LSPKEEPYFF TFGKFEVPKG LEIGIGTMAR KEKAVIYVRK QYLTESPLMH IAHDLEEVHF EVELVHFIQV RDMLGDGRLI KRRIRDGRGE FPMDCPLQDS
301: RLSVHYRGML LNEDKTVFYD SRIENGDEPL EFSSGEGLVP EGFEMCTRLM LPGEIALVTC PPDYAYDKFP RPPGVPEGAH VQWEIELLGF ETPRDWTGLD
401: FQSIMNEAEN IRSTGNRLFK EGKFELAKAK YEKVLREFNH VNPQDDEEGK VFGEARNMLH LNVAACLLKL GEWRKSVETC NKVLEAKPGH AKGLYRRGMA
501: YMGGGEYEAA RNDFNMMIKV DNSSEADASA ALLKLKQKEQ EAESKARKQF KGLFDKKPGV ITEVGSEIRE QTKTGEEVDE TKDNEEDDET QEEESTTTVS
601: TDSKWSEKAW PIMKNVMVQI GIQLGVALFG VLIFQFVSAR FT

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.