CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79704
CDX84290
CDX84896
CDX84897
CDX86408
CDY00109
CDY20012
CDY27639
CDY27839
CDY31633
CDY46744
CDY50297
CDY65012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	CDX84896	AT1G27940.1	14517332
AT3G21640.1	CDX84897	AT1G27940.1	14517332
AT3G21640.1	CDY27639	AT1G27940.1	14517332
AT3G21640.1	CDX84290	AT2G34660.1	15133126
AT3G21640.1	CDY31633	AT2G34660.1	15133126
AT3G21640.1	CDX79704	AT2G36910.1	14517332
AT3G21640.1	CDY46744	AT2G36910.1	14517332
AT3G21640.1	CDX86408	AT3G28860.1	14517332
AT3G21640.1	CDY00109	AT3G28860.1	14517332
AT3G21640.1	CDY20012	AT3G28860.1	14517332
AT3G21640.1	CDY65012	AT3G28860.1	14517332
AT3G21640.1	CDY27839	AT5G52640.1	12410806
AT3G21640.1	CDY50297	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34049	Canola	cytosol	27.61	73.27
CDY29061	Canola	cytosol	80.97	60.78
CDX78057	Canola	cytosol	79.48	60.17
CDX73664	Canola	cytosol	82.84	59.52
CDX90622	Canola	cytosol	85.07	57.72
AT3G21640.1	Thale cress	cytosol	77.99	57.26
VIT_13s0064g00580.t01	Wine grape	cytosol	67.54	49.59
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	65.67	47.57
KRH39924	Soybean	endoplasmic reticulum	65.3	47.3
Solyc01g087470.2.1	Tomato	cytosol	57.09	47.08
PGSC0003DMT400017681	Potato	cytosol	63.81	46.47
EES07974	Sorghum	cytosol	62.69	45.65
GSMUA_Achr6P12690_001	Banana	cytosol	63.06	45.19
Os12t0145500-01	Rice	cytosol	61.94	44.86
TraesCS5A01G134500.3	Wheat	cytosol	61.19	44.44
TraesCS5B01G131200.1	Wheat	cytosol	61.19	44.32
Zm00001d004930_P001	Maize	mitochondrion	61.57	44.12
Os11t0148300-01	Rice	cytosol	61.57	44.0
TraesCS5D01G139000.1	Wheat	cytosol	60.45	43.78
HORVU5Hr1G041060.1	Barley	cytosol, plastid	60.45	38.12
CDY00831	Canola	cytosol	12.69	17.89
CDY15103	Canola	cytosol	26.87	12.9
CDY52281	Canola	cytosol	26.87	12.9
CDX85348	Canola	cytosol	25.75	12.11
CDX86295	Canola	cytosol	25.75	12.04
CDY07563	Canola	cytosol	21.64	9.03
CDX76177	Canola	cytosol	20.9	8.85
CDY13167	Canola	cytosol	20.9	8.72
CDX67584	Canola	cytosol	20.9	8.63
CDY41214	Canola	nucleus	5.6	7.89
CDY40236	Canola	nucleus	5.6	7.89
CDY46798	Canola	cytosol	1.87	6.76
CDY15104	Canola	cytosol	6.34	6.14
CDY15096	Canola	cytosol	14.55	5.53
CDY58272	Canola	cytosol, mitochondrion, plastid	1.87	4.46
CDX84517	Canola	cytosol, mitochondrion, plastid	1.87	4.46
CDX81222	Canola	cytosol, mitochondrion, plastid	1.87	4.46
CDY00829	Canola	cytosol	5.22	3.92
CDY18714	Canola	endoplasmic reticulum, extracellular	1.87	3.88
CDY31323	Canola	extracellular	1.87	3.79
CDY02979	Canola	mitochondrion	0.37	0.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078JDC5	EnsemblPlants:CDY64639	ProteinID:CDY64639	ProteinID:CDY64639.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042478001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF07719	InterPro:PPIase_FKBP	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR43811
PANTHER:PTHR43811:SF21	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI0004EE37B3	SEG:seg	:	:	:

Description

BnaA03g57030DBnaA03g57030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDC5]

Coordinates

chrLK034509:+:18132..19605

Molecular Weight (calculated)

31165.5 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.521

Length

268 amino acids

Sequence
(BLAST)

001: MSFFFFYQNV FFSLVNVRSL AYWLGTGIWE RWELFFSKCS SMADLLYEVE VGFDETREAK DGLVQGKARS DMTVEERIGA ADRRKMDGNN LFKEDKLEEA
101: MQQYEMAIAY MGDDFMFQLY GKYQDMALAV KNPCHLNMAA CLIKLKRYDE AIGHCNIVLT EEEKNPKALF RRGKAKAELG QMDSAREDFR KAQKYAPDDN
201: AIRRELRAIA EQEKAVYQKQ KEMYKGIFGG GRDESGGKGK SRNWLIMLWQ WLVSLFSRIL GRNRVKAD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.