Factsheet for Zm00001d004930_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002119_P006
Zm00001d002275_P029
Zm00001d024903_P001
Zm00001d025590_P002
Zm00001d026426_P005
Zm00001d031871_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	Zm00001d002275_P029	AT2G34660.1	15133126
AT3G21640.1	Zm00001d031871_P001	AT2G36910.1	14517332
AT3G21640.1	Zm00001d002119_P006	AT3G28860.1	14517332
AT3G21640.1	Zm00001d025590_P002	AT3G28860.1	14517332
AT3G21640.1	Zm00001d026426_P005	AT3G28860.1	14517332
AT3G21640.1	Zm00001d024903_P001	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07974	Sorghum	cytosol	93.05	94.57
Os12t0145500-01	Rice	cytosol	84.22	85.14
Os11t0148300-01	Rice	cytosol	85.03	84.8
CDY34049	Canola	cytosol	22.46	83.17
TraesCS5A01G134500.3	Wheat	cytosol	81.28	82.38
TraesCS5B01G131200.1	Wheat	cytosol	81.28	82.16
TraesCS5D01G139000.1	Wheat	cytosol	81.02	81.89
VIT_13s0064g00580.t01	Wine grape	cytosol	72.19	73.97
HORVU5Hr1G041060.1	Barley	cytosol, plastid	81.28	71.53
PGSC0003DMT400017681	Potato	cytosol	69.52	70.65
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	69.52	70.27
GSMUA_Achr6P12690_001	Banana	cytosol	69.25	69.25
CDY29061	Canola	cytosol	65.51	68.63
Bra006895.1-P	Field mustard	cytosol	66.84	68.49
AT3G21640.1	Thale cress	cytosol	66.84	68.49
KRH39924	Soybean	endoplasmic reticulum	67.65	68.38
CDX78057	Canola	cytosol	64.71	68.36
Solyc01g087470.2.1	Tomato	cytosol	59.36	68.31
Bra012823.1-P	Field mustard	cytosol	64.97	68.07
CDX73664	Canola	cytosol	66.58	66.76
CDX90622	Canola	cytosol	67.11	63.54
CDY64639	Canola	endoplasmic reticulum, extracellular	44.12	61.57
Zm00001d018134_P001	Maize	mitochondrion	7.49	25.0
Zm00001d031569_P001	Maize	plasma membrane	28.34	18.28
Zm00001d004243_P001	Maize	cytosol	25.67	16.33
Zm00001d038368_P002	Maize	extracellular	10.16	15.14
Zm00001d047426_P003	Maize	cytosol	23.53	13.41
Zm00001d016512_P002	Maize	cytosol	26.47	12.41
Zm00001d029272_P002	Maize	cytosol	14.97	8.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100193080	MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:B4FDQ2	EMBL:BT035240
EMBL:EU962283	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016853	GO:GO:0019538	GO:GO:0048366	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	ProteinID:ONM19816.1	PFAM:PF00254	PFAM:PF13181	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54534	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00017B6539	EnsemblPlantsGene:Zm00001d004930	EnsemblPlants:Zm00001d004930_P001	EnsemblPlants:Zm00001d004930_T001	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase FKBP42

Coordinates

chr2:-:149275452..149278598

Molecular Weight (calculated)

41998.3 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.459

Length

374 amino acids

Sequence
(BLAST)

001: MAVVEEDAAA SADPAAASDP AAGSSENEIT VEEASFVHSE PPQDGSAPPV VSSDMEALHD KVKKQIIKEG HGRKPLKFAT CFVHYRAWVQ GSSHKFEDTW
101: QEQHPIELVL GKEKKQMSGL GIGVGSMKSG ERALLHVGWE LGYGKEGSFS FPNVPPMADL VYEVELIGFD DVKEGKSRSD MTVEERIAAA DRRKIEGNAY
201: FKEKKLEEAM QQYEMAIAYM GDDFMFQLFG KYRDMALAVK NPCHLNMAAC LIKLKRFDEA IAQCSIVLTE DESNVKALFR RGKAKSELGQ TESAREDFLK
301: AKKYSPEDKE IIRELRLLAE QDKALYQKQK ELYKGLFGPS PEAKPKKAKY LVVFWQCLVS FILYLAGMFK RKNE

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.