Factsheet for GSMUA_Achr6P12690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P04430_001
GSMUA_Achr4P09980_001
GSMUA_Achr4P12130_001
GSMUA_Achr7P03410_001
GSMUA_Achr8P19130_001
GSMUA_Achr8P24160_001
GSMUA_Achr8P33250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	GSMUA_Achr7P03410_001	AT2G34660.1	15133126
AT3G21640.1	GSMUA_Achr8P33250_001	AT2G34660.1	15133126
AT3G21640.1	GSMUA_Achr4P04430_001	AT2G36910.1	14517332
AT3G21640.1	GSMUA_Achr4P12130_001	AT2G36910.1	14517332
AT3G21640.1	GSMUA_Achr4P09980_001	AT3G28860.1	14517332
AT3G21640.1	GSMUA_Achr8P24160_001	AT3G28860.1	14517332
AT3G21640.1	GSMUA_Achr8P19130_001	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34049	Canola	cytosol	21.39	79.21
VIT_13s0064g00580.t01	Wine grape	cytosol	75.94	77.81
Os12t0145500-01	Rice	cytosol	72.19	72.97
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	72.19	72.97
KRH39924	Soybean	endoplasmic reticulum	71.93	72.7
AT3G21640.1	Thale cress	cytosol	69.79	71.51
EES07974	Sorghum	cytosol	70.32	71.47
Os11t0148300-01	Rice	cytosol	71.39	71.2
CDY29061	Canola	cytosol	67.91	71.15
Bra006895.1-P	Field mustard	cytosol	69.25	70.96
PGSC0003DMT400017681	Potato	cytosol	69.79	70.92
CDX78057	Canola	cytosol	67.11	70.9
Bra012823.1-P	Field mustard	cytosol	67.65	70.87
CDX73664	Canola	cytosol	69.52	69.71
TraesCS5A01G134500.3	Wheat	cytosol	68.45	69.38
Zm00001d004930_P001	Maize	mitochondrion	69.25	69.25
TraesCS5B01G131200.1	Wheat	cytosol	68.18	68.92
TraesCS5D01G139000.1	Wheat	cytosol	68.18	68.92
Solyc01g087470.2.1	Tomato	cytosol	59.36	68.31
CDX90622	Canola	cytosol	69.79	66.08
CDY64639	Canola	endoplasmic reticulum, extracellular	45.19	63.06
HORVU5Hr1G041060.1	Barley	cytosol, plastid	68.45	60.24
GSMUA_Achr7P22780_001	Banana	cytosol	26.74	18.21
GSMUA_Achr6P27770_001	Banana	cytosol	27.81	17.99
GSMUA_AchrUn_...	Banana	cytosol	27.54	17.73
GSMUA_Achr10P...	Banana	cytosol	26.2	17.44
GSMUA_Achr5P05550_001	Banana	cytosol, mitochondrion, plastid	5.35	16.53
GSMUA_AchrUn_...	Banana	nucleus	8.29	16.49
GSMUA_Achr8P04930_001	Banana	cytosol	25.94	15.28
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	22.99	13.78

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	GO:GO:0048366	EnsemblPlantsGene:GSMUA_Achr6G12690_001	EnsemblPlants:GSMUA_Achr6P12690_001
EnsemblPlants:GSMUA_Achr6T12690_001	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M0T6G7
PFAM:PF00254	PFAM:PF07719	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059
PFscan:PS50293	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI000296D41A	SEG:seg

Description

42 kDa peptidyl-prolyl isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr6G12690_001]

Coordinates

chr6:+:8463689..8468747

Molecular Weight (calculated)

42594.9 Da

IEP (calculated)

6.090

GRAVY (calculated)

-0.582

Length

374 amino acids

Sequence
(BLAST)

001: MASPPPESPS MADPDVLSSA SGSDDDNDIV TEGSAFVHNE PAQDDKDLPK VESEMEVLHE KVKKQIIKEG HGQKPPKLST CFLNYRAWVK STSHKFEDTW
101: QEQRPIELIL GKEKAELAGL AIGIASMRSG ERALFHVGWE LGYGKEGNFS FPNVPPMADL VYEVELIGYD EAKEGKARSD MTVEERIEAA ERRKVEGNDY
201: FKEKKVEEAM QQYEMAIAYM GDDFMFQLFG KYRDMALAVK NPCHLNMAAC LIKLKRYEEA IGQCTIVLSE DENNVKALFR RGKARAELGQ TDAAKEDFEK
301: ARKYSPQDKA IVRELHLLAA HDKAVYQKQK EIYKGIFGPR PEPKPMRSNW LVLFWQWLVA LVCRLFRIHR SKAD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.