Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P12690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34660.1 | GSMUA_Achr6P12690_001 | AT3G21640.1 | 15133126 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P33250_001 | Banana | endoplasmic reticulum, golgi, plastid | 71.41 | 81.43 |
| CDY72149 | Canola | cytosol, peroxisome, plasma membrane | 28.87 | 68.63 |
| EES12878 | Sorghum | plasma membrane | 70.03 | 62.63 |
| Zm00001d002275_P029 | Maize | plasma membrane | 69.48 | 62.06 |
| Os04t0620000-01 | Rice | plasma membrane | 69.0 | 61.71 |
| HORVU2Hr1G103620.1 | Barley | plasma membrane | 67.77 | 60.57 |
| KRH21096 | Soybean | endoplasmic reticulum | 66.87 | 60.06 |
| KRH11151 | Soybean | plasma membrane | 66.39 | 59.63 |
| Solyc08g006880.2.1 | Tomato | nucleus | 65.29 | 58.43 |
| AT2G34660.1 | Thale cress | plasma membrane | 65.09 | 58.35 |
| CDY31633 | Canola | plasma membrane | 64.88 | 58.06 |
| Bra005402.1-P | Field mustard | plasma membrane | 64.81 | 58.0 |
| CDX84290 | Canola | plasma membrane | 64.88 | 57.95 |
| VIT_10s0003g04470.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 64.47 | 57.76 |
| TraesCS1A01G404300.1 | Wheat | plasma membrane | 63.71 | 57.69 |
| CDY12054 | Canola | plasma membrane | 64.12 | 57.49 |
| CDX90247 | Canola | plasma membrane | 63.78 | 57.14 |
| CDY09591 | Canola | plasma membrane | 63.78 | 57.14 |
| CDY02289 | Canola | plasma membrane | 63.71 | 57.12 |
| Bra032385.1-P | Field mustard | plasma membrane | 63.71 | 57.12 |
| Bra010773.1-P | Field mustard | plasma membrane | 62.13 | 56.86 |
| AT1G30410.1 | Thale cress | plasma membrane | 55.81 | 54.21 |
| Bra014879.1-P | Field mustard | plasma membrane | 56.22 | 54.1 |
| CDX98202 | Canola | plasma membrane | 54.16 | 54.01 |
| AT1G30420.1 | Thale cress | plasma membrane | 53.95 | 52.51 |
| CDY09589 | Canola | plasma membrane | 53.68 | 52.31 |
| CDY02290 | Canola | plasma membrane | 55.12 | 49.66 |
| Bra032386.1-P | Field mustard | plasma membrane | 48.73 | 49.1 |
| GSMUA_Achr2P02280_001 | Banana | cytosol, golgi, plasma membrane | 23.71 | 29.9 |
| GSMUA_Achr10P... | Banana | plasma membrane | 24.67 | 29.43 |
| GSMUA_Achr8P12730_001 | Banana | plasma membrane | 25.64 | 27.35 |
| GSMUA_Achr6P31980_001 | Banana | plasma membrane | 23.44 | 26.64 |
| GSMUA_Achr10P... | Banana | plasma membrane | 23.37 | 26.52 |
| GSMUA_Achr11P... | Banana | plasma membrane | 26.25 | 26.18 |
| GSMUA_Achr10P... | Banana | plasma membrane | 21.79 | 25.98 |
| GSMUA_Achr11P... | Banana | golgi | 22.82 | 24.61 |
| GSMUA_Achr5P25430_001 | Banana | plasma membrane | 22.34 | 24.38 |
Protein Annotations
| Gene3D:1.20.1560.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| EnsemblPlantsGene:GSMUA_Achr7G03410_001 | EnsemblPlants:GSMUA_Achr7P03410_001 | EnsemblPlants:GSMUA_Achr7T03410_001 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 |
| UniProt:M0TED1 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 |
| PFscan:PS50929 | PANTHER:PTHR24223 | PANTHER:PTHR24223:SF251 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 |
| TMHMM:TMhelix | UniParc:UPI000296E0D1 | SEG:seg | : | : | : |
Description
ABC transporter C family member 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03410_001]
Coordinates
chr7:-:2702082..2721481
Molecular Weight (calculated)
163410.0 Da
IEP (calculated)
7.906
GRAVY (calculated)
0.182
Length
1455 amino acids
Sequence
(BLAST)
(BLAST)
0001: MISFIPCLHS SKGTDFFFFS LQVAAVFRKS LRLTHESRTK FLSGKITNLM TTDADFLKMF VQVCQQLHSI WSAPFRITIS VILLYQQLGI ASLVGAFVLV
0101: LLIPIQTFVI SKMQKLSKAG LQHTDKRISL MNEILAAMDT VKCYAWEKSF QSKVQSIRND ELSWFRKAQL LAAFNSFILN SIPVLVTVAS FGVYSLLGGD
0201: LTPAKAFTSL SLFSVLRFPL FMLPNLITQV VNCNVSLKRL EDLLLAEERI LLPNPPLEPQ LPAISIKNGY FSWDSKYHIS FDFKPGGWSL KFLLCFLFVY
0301: NYLLFIYITF LFFFRIKNRD LKFKSSRSFE SIIIFGYNPC SVLVCAPCSF TKLLTFARCQ SQANVTEAER PTLFNVNVDI PVGSLVAIVG STGEGKTSLI
0401: SAMLGELPPV AGTETSAVIR GTVAYVPQVS WIFNATVRDN ILFGSPFQLS RYEKAVEVTA LQHDLDLLPG GDHTEIGERG VNISGGQKQR VSMARAVYSD
0501: SDVYIFDDPL SALDAHVGRQ VFDKCIKDQL RNKTRVLVTN QLHFLPNVDK IILVHEGMVK EEGTFEELCE SAEENAKSSE NGEVTKMVNA LSKKEEKPNK
0601: GKEGKTVLIK QEERETGVVS LKVLASFFIL RLNTEESFSS LCSNFNSECF FLIPLASAYS CLLSVMICCY MVMVNAFLVL IFSFGNLAPY PWFMYKNALG
0701: GMWVVLILFS CYTLTEILRV SSSTWLSVWT DQSSLKSHGP GFYNLIYASL SFGQVLVTLT NSYWLITSSL YAAKRLHDAM LHSILRAPMV FFHTNPLGRI
0801: INRFAKDLGD IDRSVAVFVN MFLGQISQLL STFVLIGIVS TTSLWAIMPL LILFYAAYLY YQFHYNASDL FMIIYFQTCT NFAKFCPLYF SHLLAIPSPS
0901: TVTLFLINLH VTMLFLFNLA FLMKHLSHVI YASTAREVKR LDSITRSPVY AQFAEALNGL STIRAYKAYD RMASINGKSM DNNIRFTLVN MGANRWLGIR
1001: LETLGGIMIW FTATFAVMQN QRAENQKAFA STMGLLLTYA LNITNLLTAV LRLASLAENS LNAVERVGTY IELPSEAPAV IENNRPPPAW PSSGTIKFQD
1101: VVGIVGRTGA GKSSMLNALF RIVEMERGRI FIDDCDVSKF GLWDLRKVLG IIPQSPVLFS GTVRFNLDPF SEHNDADLWE ALERAHLKDV IRRNSLGLDA
1201: EVSEAGENFS VGQRQLLSLA RALLRRSKIL VLDEATAAVD VRTDSLIQKT IREEFKSCTM LIIAHRLNTI IDCDRILLLS AGQVLEFDTP ETLLSNEESA
1301: FYKMVQSTGA ANAQYLRGLV FGAGENGSRR EEIKRQEGER RWLASSRWVA AAQFALAVSL TSSQNDLHQL EIDDENNILN RTKDAVITLQ SILEGKHDTE
1401: IEEKLEQHNV PSSRWWSSLY KVVEGLAIMS KLARNRLQPG SEFEDNSIDW DQVVM
0101: LLIPIQTFVI SKMQKLSKAG LQHTDKRISL MNEILAAMDT VKCYAWEKSF QSKVQSIRND ELSWFRKAQL LAAFNSFILN SIPVLVTVAS FGVYSLLGGD
0201: LTPAKAFTSL SLFSVLRFPL FMLPNLITQV VNCNVSLKRL EDLLLAEERI LLPNPPLEPQ LPAISIKNGY FSWDSKYHIS FDFKPGGWSL KFLLCFLFVY
0301: NYLLFIYITF LFFFRIKNRD LKFKSSRSFE SIIIFGYNPC SVLVCAPCSF TKLLTFARCQ SQANVTEAER PTLFNVNVDI PVGSLVAIVG STGEGKTSLI
0401: SAMLGELPPV AGTETSAVIR GTVAYVPQVS WIFNATVRDN ILFGSPFQLS RYEKAVEVTA LQHDLDLLPG GDHTEIGERG VNISGGQKQR VSMARAVYSD
0501: SDVYIFDDPL SALDAHVGRQ VFDKCIKDQL RNKTRVLVTN QLHFLPNVDK IILVHEGMVK EEGTFEELCE SAEENAKSSE NGEVTKMVNA LSKKEEKPNK
0601: GKEGKTVLIK QEERETGVVS LKVLASFFIL RLNTEESFSS LCSNFNSECF FLIPLASAYS CLLSVMICCY MVMVNAFLVL IFSFGNLAPY PWFMYKNALG
0701: GMWVVLILFS CYTLTEILRV SSSTWLSVWT DQSSLKSHGP GFYNLIYASL SFGQVLVTLT NSYWLITSSL YAAKRLHDAM LHSILRAPMV FFHTNPLGRI
0801: INRFAKDLGD IDRSVAVFVN MFLGQISQLL STFVLIGIVS TTSLWAIMPL LILFYAAYLY YQFHYNASDL FMIIYFQTCT NFAKFCPLYF SHLLAIPSPS
0901: TVTLFLINLH VTMLFLFNLA FLMKHLSHVI YASTAREVKR LDSITRSPVY AQFAEALNGL STIRAYKAYD RMASINGKSM DNNIRFTLVN MGANRWLGIR
1001: LETLGGIMIW FTATFAVMQN QRAENQKAFA STMGLLLTYA LNITNLLTAV LRLASLAENS LNAVERVGTY IELPSEAPAV IENNRPPPAW PSSGTIKFQD
1101: VVGIVGRTGA GKSSMLNALF RIVEMERGRI FIDDCDVSKF GLWDLRKVLG IIPQSPVLFS GTVRFNLDPF SEHNDADLWE ALERAHLKDV IRRNSLGLDA
1201: EVSEAGENFS VGQRQLLSLA RALLRRSKIL VLDEATAAVD VRTDSLIQKT IREEFKSCTM LIIAHRLNTI IDCDRILLLS AGQVLEFDTP ETLLSNEESA
1301: FYKMVQSTGA ANAQYLRGLV FGAGENGSRR EEIKRQEGER RWLASSRWVA AAQFALAVSL TSSQNDLHQL EIDDENNILN RTKDAVITLQ SILEGKHDTE
1401: IEEKLEQHNV PSSRWWSSLY KVVEGLAIMS KLARNRLQPG SEFEDNSIDW DQVVM
0001: MCRKQDQNIS TYLMFWWGGF WKIGNDCSQF VGPLLLNQLL KSMQEDAPAW MGYIYAFSIF VGVVFGVLCE AQYFQNVMRV GYRLRSALIA AVFRKSLRLT
0101: NEGRRKFQTG KITNLMTTDA ESLQQICQSL HTMWSAPFRI IIALILLYQQ LGVASLIGAL LLVLMFPLQT VIISKMQKLT KEGLQRTDKR IGLMNEVLAA
0201: MDTVKCYAWE NSFQSKVQTV RDDELSWFRK SQLLGALNMF ILNSIPVLVT IVSFGVFTLL GGDLTPARAF TSLSLFAVLR FPLFMLPNII TQVVNANVSL
0301: KRLEEVLATE ERILLPNPPI EPGEPAISIR NGYFSWDSKG DRPTLSNINL DVPLGSLVAV VGSTGEGKTS LISAILGELP ATSDAIVTLR GSVAYVPQVS
0401: WIFNATVRDN ILFGSPFDRE KYERAIDVTS LKHDLELLPG GDLTEIGERG VNISGGQKQR VSMARAVYSN SDVYIFDDPL SALDAHVGQQ VFEKCIKREL
0501: GQKTRVLVTN QLHFLSQVDR IVLVHEGTVK EEGTYEELSS NGPLFQRLME NAGKVEEYSE ENGEAEADQT AEQPVANGNT NGLQMDGSDD KKSKEGNKKG
0601: GKSVLIKQEE RETGVVSWRV LKRYQDALGG AWVVMMLLLC YVLTEVFRVT SSTWLSEWTD AGTPKSHGPL FYNLIYALLS FGQVLVTLTN SYWLIMSSLY
0701: AAKKLHDNML HSILRAPMSF FHTNPLGRII NRFAKDLGDI DRTVAVFVNM FMGQVSQLLS TVVLIGIVST LSLWAIMPLL VLFYGAYLYY QNTAREVKRM
0801: DSISRSPVYA QFGEALNGLS TIRAYKAYDR MADINGRSMD NNIRFTLVNM GANRWLGIRL ETLGGLMIWL TASFAVMQNG RAENQQAFAS TMGLLLSYAL
0901: NITSLLTGVL RLASLAENSL NAVERVGNYI EIPPEAPPVI ENNRPPPGWP SSGSIKFEDV VLRYRPQLPP VLHGVSFFIH PTDKVGIVGR TGAGKSSLLN
1001: ALFRIVEVEK GRILIDDCDV GKFGLMDLRK VLGIIPQSPV LFSGTVRFNL DPFGEHNDAD LWESLERAHL KDTIRRNPLG LDAEVSEAGE NFSVGQRQLL
1101: SLSRALLRRS KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDKIL VLDSGRVQEF SSPENLLSNE GSSFSKMVQS TGAANAEYLR
1201: SLVLDNKRAK DDSHHLQGQR KWLASSRWAA AAQFALAASL TSSHNDLQSL EIEDDSSILK RTNDAVVTLR SVLEGKHDKE IAESLEEHNI SREGWLSSLY
1301: RMVEGLAVMS RLARNRMQQP DYNFEGNTFD WDNVEM
0101: NEGRRKFQTG KITNLMTTDA ESLQQICQSL HTMWSAPFRI IIALILLYQQ LGVASLIGAL LLVLMFPLQT VIISKMQKLT KEGLQRTDKR IGLMNEVLAA
0201: MDTVKCYAWE NSFQSKVQTV RDDELSWFRK SQLLGALNMF ILNSIPVLVT IVSFGVFTLL GGDLTPARAF TSLSLFAVLR FPLFMLPNII TQVVNANVSL
0301: KRLEEVLATE ERILLPNPPI EPGEPAISIR NGYFSWDSKG DRPTLSNINL DVPLGSLVAV VGSTGEGKTS LISAILGELP ATSDAIVTLR GSVAYVPQVS
0401: WIFNATVRDN ILFGSPFDRE KYERAIDVTS LKHDLELLPG GDLTEIGERG VNISGGQKQR VSMARAVYSN SDVYIFDDPL SALDAHVGQQ VFEKCIKREL
0501: GQKTRVLVTN QLHFLSQVDR IVLVHEGTVK EEGTYEELSS NGPLFQRLME NAGKVEEYSE ENGEAEADQT AEQPVANGNT NGLQMDGSDD KKSKEGNKKG
0601: GKSVLIKQEE RETGVVSWRV LKRYQDALGG AWVVMMLLLC YVLTEVFRVT SSTWLSEWTD AGTPKSHGPL FYNLIYALLS FGQVLVTLTN SYWLIMSSLY
0701: AAKKLHDNML HSILRAPMSF FHTNPLGRII NRFAKDLGDI DRTVAVFVNM FMGQVSQLLS TVVLIGIVST LSLWAIMPLL VLFYGAYLYY QNTAREVKRM
0801: DSISRSPVYA QFGEALNGLS TIRAYKAYDR MADINGRSMD NNIRFTLVNM GANRWLGIRL ETLGGLMIWL TASFAVMQNG RAENQQAFAS TMGLLLSYAL
0901: NITSLLTGVL RLASLAENSL NAVERVGNYI EIPPEAPPVI ENNRPPPGWP SSGSIKFEDV VLRYRPQLPP VLHGVSFFIH PTDKVGIVGR TGAGKSSLLN
1001: ALFRIVEVEK GRILIDDCDV GKFGLMDLRK VLGIIPQSPV LFSGTVRFNL DPFGEHNDAD LWESLERAHL KDTIRRNPLG LDAEVSEAGE NFSVGQRQLL
1101: SLSRALLRRS KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDKIL VLDSGRVQEF SSPENLLSNE GSSFSKMVQS TGAANAEYLR
1201: SLVLDNKRAK DDSHHLQGQR KWLASSRWAA AAQFALAASL TSSHNDLQSL EIEDDSSILK RTNDAVVTLR SVLEGKHDKE IAESLEEHNI SREGWLSSLY
1301: RMVEGLAVMS RLARNRMQQP DYNFEGNTFD WDNVEM
Arabidopsis Description
ABCC2ABC transporter C family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42093]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.