CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
peroxisome 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23877
KRH39924

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34660.1	KRH23877	AT3G21640.1	15133126
AT2G34660.1	KRH39924	AT3G21640.1	15133126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11151	Soybean	plasma membrane	95.86	95.86
Solyc08g006880.2.1	Tomato	nucleus	79.07	78.78
AT2G34660.1	Thale cress	plasma membrane	77.1	76.96
Bra005402.1-P	Field mustard	plasma membrane	76.36	76.08
CDX84290	Canola	plasma membrane	76.48	76.06
CDY31633	Canola	plasma membrane	76.3	76.01
CDY12054	Canola	plasma membrane	75.43	75.29
Bra010773.1-P	Field mustard	plasma membrane	73.58	74.97
GSMUA_Achr8P33250_001	Banana	endoplasmic reticulum, golgi, plastid	58.89	74.76
CDX90247	Canola	plasma membrane	74.88	74.69
CDY09591	Canola	plasma membrane	74.69	74.51
EES12878	Sorghum	plasma membrane	74.75	74.43
CDY02289	Canola	plasma membrane	74.51	74.37
Bra032385.1-P	Field mustard	plasma membrane	74.44	74.31
Os04t0620000-01	Rice	plasma membrane	74.32	74.0
Zm00001d002275_P029	Maize	plasma membrane	74.14	73.73
HORVU2Hr1G103620.1	Barley	plasma membrane	73.7	73.34
TraesCS1A01G404300.1	Wheat	plasma membrane	69.75	70.32
GSMUA_Achr7P03410_001	Banana	endoplasmic reticulum, plasma membrane, plastid	60.06	66.87
KRG91620	Soybean	plasma membrane	25.62	33.47
KRH73882	Soybean	plasma membrane	26.23	32.89
KRG98556	Soybean	nucleus	26.36	32.82
KRH01233	Soybean	cytosol, endoplasmic reticulum, plasma membrane	26.23	32.54
KRG96433	Soybean	endoplasmic reticulum	29.32	31.58
KRH37107	Soybean	endoplasmic reticulum	29.2	31.41
KRH12057	Soybean	endoplasmic reticulum	29.01	31.31
KRH35194	Soybean	endoplasmic reticulum, nucleus, plasma membrane	28.02	30.7
KRH08764	Soybean	plasma membrane	28.02	30.66
KRH46626	Soybean	plasma membrane	27.59	30.6
KRH31883	Soybean	plastid	28.33	30.58
KRH67468	Soybean	endoplasmic reticulum, plasma membrane, vacuole	28.95	30.47
KRG99624	Soybean	plasma membrane	27.96	30.44
KRH19633	Soybean	plasma membrane	28.46	30.39
KRG95750	Soybean	plasma membrane	28.7	30.25
KRH73881	Soybean	plasma membrane	27.84	30.21
KRH48930	Soybean	endoplasmic reticulum	28.02	30.21
KRH23646	Soybean	plasma membrane	27.28	30.11
KRH14256	Soybean	plasma membrane	27.65	29.99
KRH58734	Soybean	plasma membrane	26.85	29.96
KRH47149	Soybean	plasma membrane	27.04	29.92
KRH42626	Soybean	plasma membrane	26.85	29.9
KRH46325	Soybean	plasma membrane	27.59	29.88
KRH46324	Soybean	plasma membrane	27.04	29.14
KRH66359	Soybean	plasma membrane	27.28	29.04
KRH08755	Soybean	plasma membrane	26.73	28.81
KRH73880	Soybean	plasma membrane	20.49	27.06

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100795004	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02008338	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G220000
GO:GO:0000166	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1M1I0	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	EnsemblPlants:KRH21096	ProteinID:KRH21096	ProteinID:KRH21096.1	ProteinID:KRH21097.1	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24223
PANTHER:PTHR24223:SF251	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000233AAE5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33313732..33336740

Molecular Weight (calculated)

181864.0 Da

IEP (calculated)

6.570

GRAVY (calculated)

0.088

Length

1620 amino acids

Sequence
(BLAST)

0001: MTFEPLDWYC RPVANGVWTR SVENAFGAYT PCAVDSLVIS VSNLILLGLC IYRIWLIKKD FTVKRFHLRS NLYNYILGLL ALYCVAEPLY RLILGISVLN
0101: LDGQTQFAPF EIVSLIIEAL AWCSILILIG IETKVYIREF RWFVRFGLIY AIVGDAVMFN LIISVKELYS SSVLYLYISE VVGQVLFGIL LLVYVPTLDP
0201: YPGYTPIGSD MITDAAYDEL PGGDMICPER NANILSKIMF SWMNPIMKLG YQRPLTEKDI WKLDTWERTE TLINKFQKCW VEESRKPKPW LLRALNASLG
0301: GRFWWGGFCK IGNDISQFLG PLILNQLLQS MQNGDPSWTG YAYAFSIFVG VVFGVLCEAQ YFQNVMRVGY RLRSTLVAAV FRKSLRLTHE ARKQFATGKI
0401: TNLMTTDAEA LQQICQSLHT LWSAPFRIVV AMVLLYQQLG VASLLGALML VLMFPLQTFI ISRMQKFSKE GLQRTDKRIG LMNEILAAMD TVKYYAWESS
0501: FQSKVQIVRN DELSWFRKAS LLGACNAFIL NSIPVFVTVI TFGVFTLLGG DLTPARAFTS LSLFSVLRFP LFMLPNTITQ VVNANVSLKR LEDLLLAEER
0601: ILLSNPPLEP GLPAISIKNG YFSWDTKAER ATLSNINLDI PVGCLVAVVG STGEGKTSLV SAMLGELPPM ADSTVVLRGT VAYVPQVSWI FNATVRDNVL
0701: FGSVFDPTRY ERAINVTELQ HDLELLPGGD HTEIGERGVN ISGGQKQRVS MARAVYSNSD VYIFDDPLSA LDAHVARQVF DKCIKGDLRE KTRVLVTNQL
0801: HFLSQVDRII LVHEGMVKEE GTFEELSNHG LLFQKLMENA GKMEEYEEEE KVVTETTDQK PSSEPVANGS VNDHAKSGSK PKEGKSVLIK QEERETGVVS
0901: WNVLLRYKNA LGGFWVVFVL FACYVSTETL RISSSTWLSH WTDQSATKGY NPAFYNMIYA ALSFGQVLVT LTNSYWLIIS SLYAARRLHE AMLSSILRAP
1001: MVFFQTNPLG RVINRFAKDL GDIDRNVAPF VNMFLGQVSQ LLSTFILIGI VSTMSLWAIL PLLVLFYVAY LYYQSTAREV KRLDSISRSP VYAQFGEALN
1101: GLSTIRAYKA YDRMADINGK SMDNNIRFTL VNISGNRWLA IRLETLGGLM IWLTATFAVM QNGRAENQQE FASTMGLLLS YALNITSLLT GVLRLASLAE
1201: NSLNAVERIG TYIDLPSEAP SIIDDNRPPP GWPSSGSIRF EDVVLRYRAE LPPVLHGLSF TIFPSDKVGI VGRTGAGKSS MLNALFRIVE LERGRILIDD
1301: YDVAKFGLAD LRKVLGIIPQ SPVLFSGTVR FNLDPFNEHN DADLWEALER AHLKDVIRRN SLGLDAEVSE AGENFSVGQR QLLSLSRALL RRSKILVLDE
1401: ATAAVDVRTD ALIQKTIREE FKSCTMLIIA HRLNTIIDCD RILLLDGGKV LEYDTPEELL SNEGSAFSKM VQSTGAANAQ YLRSLALGGD KSEREENEHL
1501: DGKRKWLASS RWAAAAQFAL AVSLTSSHND LQRLEVEDEN SILKKTKDAL ITLQGVLERK YDKEIEESLN QRQVSPEGWW SSLYKMIEGL AMMSRLAKNR
1601: LHQSDFGFED RSINFDQVDM

Best Arabidopsis Sequence Match ( AT1G30400.2 )
(BLAST)

0001: MGFEPLDWYC KPVPNGVWTK TVDYAFGAYT PCAIDSFVLG ISHLVLLILC LYRLWLITKD HKVDKFCLRS KWFSYFLALL AAYATAEPLF RLVMRISVLD
0101: LDGAGFPPYE AFMLVLEAFA WGSALVMTVV ETKTYIHELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: PGYTPVGTEN SEDYEYEELP GGENICPERH ANLFDSIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDKTET LMRSFQKSWD KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVA LVLLYQQLGV ASIIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVLVTVVS FGVFSLLGGD LTPARAFTSL SLFSVLRFPL FMLPNIITQM VNANVSLNRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKADRP TLSNINLDIP LGSLVAVVGS TGEGKTSLIS AMLGELPARS DATVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDQEKYE RVIDVTALQH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELGQT TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELCHSGP LFQRLMENAG KVEDYSEENG EAEVDQTSVK PVENGNANNL QKDGIETKNS KEGNSVLVKR EERETGVVSW
0901: KVLERYQNAL GGAWVVMMLV ICYVLTQVFR VSSSTWLSEW TDSGTPKTHG PLFYNIVYAL LSFGQVSVTL INSYWLIMSS LYAAKKMHDA MLGSILRAPM
1001: VFFQTNPLGR IINRFAKDMG DIDRTVAVFV NMFMGSIAQL LSTVILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREIK RMDSTTRSPV YAQFGEALNG
1101: LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMAANRWLGI RLEVLGGLMV WLTASLAVMQ NGKAANQQAY ASTMGLLLSY ALSITSSLTA VLRLASLAEN
1201: SLNSVERVGN YIEIPSEAPL VIENNRPPPG WPSSGSIKFE DVVLRYRPEL PPVLHGVSFL ISPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC
1301: DIGRFGLMDL RKVLGIIPQA PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ LLSLARALLR RSKILVLDEA
1401: TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK VLVLDSGKVQ EFSSPENLLS NGESSFSKMV QSTGTANAEY LRSITLENKR TREANGDDSQ
1501: PLEGQRKWQA SSRWAAAAQF ALAVSLTSSH NDLQSLEIED DNSILKKTKD AVVTLRSVLE GKHDKEIEDS LNQSDISRER WWPSLYKMVE GLAVMSRLAR
1601: NRMQHPDYNL EGKSFDWDNV EM

Arabidopsis Description

ABCC1ABC transporter C family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.