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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 6
  • endoplasmic reticulum 2
  • plasma membrane 3
  • extracellular 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH37107 Soybean endoplasmic reticulum 95.14 94.82
KRH31883 Soybean plastid 62.89 62.89
GSMUA_Achr2P02280_001 Banana cytosol, golgi, plasma membrane 47.57 61.87
KRG96433 Soybean endoplasmic reticulum 61.49 61.37
PGSC0003DMT400016069 Potato endoplasmic reticulum, plasma membrane 55.96 61.22
Solyc01g080640.2.1 Tomato plastid 60.89 61.01
TraesCS2A01G056800.1 Wheat plasma membrane 38.64 58.47
KXG32483 Sorghum plasma membrane 57.76 57.34
TraesCS5B01G479900.1 Wheat golgi 57.49 57.27
TraesCS5D01G480600.1 Wheat plasma membrane 57.43 57.24
TraesCS5A01G467600.1 Wheat plasma membrane 57.3 57.14
Zm00001d009243_P001 Maize mitochondrion 57.23 56.93
Os04t0209200-01 Rice plasma membrane 48.23 56.65
Os01t0356400-01 Rice plasma membrane 55.83 54.88
HORVU2Hr1G009680.2 Barley plastid 38.77 52.53
EES10452 Sorghum plastid 52.9 51.26
TraesCS2B01G069000.2 Wheat plastid 52.23 51.21
Zm00001d004361_P001 Maize plasma membrane 52.03 50.85
Os04t0209300-01 Rice plasma membrane 50.63 50.26
Zm00001d025043_P004 Maize plasma membrane, plastid 50.23 49.48
TraesCSU01G014100.1 Wheat plasma membrane 49.23 49.14
TraesCS2A01G056900.1 Wheat plasma membrane, plastid 48.43 48.89
TraesCS2A01G057100.1 Wheat plasma membrane 48.9 48.87
HORVU2Hr1G009580.3 Barley plastid 42.37 43.06
KRG91620 Soybean plasma membrane 34.51 41.77
KRH73882 Soybean plasma membrane 35.91 41.72
KRG98556 Soybean nucleus 35.38 40.81
KRH01233 Soybean cytosol, endoplasmic reticulum, plasma membrane 34.58 39.74
KRH19633 Soybean plasma membrane 38.97 38.56
KRH46325 Soybean plasma membrane 38.31 38.44
KRH67468 Soybean endoplasmic reticulum, plasma membrane, vacuole 39.31 38.34
KRH14256 Soybean plasma membrane 37.97 38.15
KRH35194 Soybean endoplasmic reticulum, nucleus, plasma membrane 37.58 38.13
KRH46324 Soybean plasma membrane 38.17 38.12
KRG99624 Soybean plasma membrane 37.77 38.1
KRG95750 Soybean plasma membrane 38.91 38.0
KRH46626 Soybean plasma membrane 36.98 37.99
KRH73881 Soybean plasma membrane 37.71 37.91
KRH48930 Soybean endoplasmic reticulum 37.64 37.59
KRH47149 Soybean plasma membrane 35.51 36.41
KRH66359 Soybean plasma membrane 36.84 36.33
KRH08755 Soybean plasma membrane 36.11 36.06
KRH08764 Soybean plasma membrane 35.58 36.06
KRH58734 Soybean plasma membrane 33.78 34.92
KRH73880 Soybean plasma membrane 28.51 34.88
KRH42626 Soybean plasma membrane 33.71 34.78
KRH11151 Soybean plasma membrane 31.38 29.07
KRH21096 Soybean endoplasmic reticulum 31.31 29.01
KRH23646 Soybean plasma membrane 28.18 28.81
Protein Annotations
Gene3D:1.20.1560.10EntrezGene:100780167MapMan:24.1.3.1.2Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABC1_TM_dom
InterPro:ABC1_TM_sfInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEMBL:ACUP02009262EnsemblPlantsGene:GLYMA_15G148500GO:GO:0000166
GO:GO:0000325GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887
GO:GO:0042626GO:GO:0055085UniProt:I1MGL7InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640
EnsemblPlants:KRH12057ProteinID:KRH12057ProteinID:KRH12057.1InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664
ScanProsite:PS00211PFscan:PS50893PFscan:PS50929PANTHER:PTHR24223PANTHER:PTHR24223:SF215SMART:SM00382
SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelixUniParc:UPI000233B1AASEG:seg:
Description
hypothetical protein
Coordinates
chr15:+:12216661..12226663
Molecular Weight (calculated)
167580.0 Da
IEP (calculated)
8.210
GRAVY (calculated)
0.197
Length
1501 amino acids
Sequence
(BLAST)
0001: MSPSFSPSWL TSPSCSTLDI DSSSPTALLI VQWLRFIFLS PCPQRVLLSA VDSIFLLSLL AFAAAKLYSR FTSNATSNST ITKPLLQEKD SDYKVTFWFK
0101: LPLLVTTLLA IAYTVLSILA FTQTSLPSWK LIEALFRLFQ AVSNIVVAIL MVHEKKFKAS KHPLSLRIYW IANLVVSCLF ATSAIVRLIT VDVVKLELSL
0201: RVDDIFSLVN LPLSAFLFLV AMKGSTGIQV IRISDVVTTY QSLYTDRTLS PYAYSSFFSK TVWLWMNPLL NKGYKTSLKL EDVPSLPIDF RAEKMSELFH
0301: SNWPKPEENS KHPVGLTLLR CFWKHIAFTG FLAVIRLGVM YIGPMLIQSF VDFTSRKDST PYEGLVLILI LYLAKSTEVL SLHHFNFHSQ KLGMLIRSSL
0401: ITSVYKKGLR LSSSSRQAHG TGQIVNHMSV DAQQLADLMM QFHPIWLMPL QVTAALVLIY SNIGVSAFAA LLGSSIVFVF TLIRTKRTNS YQFMIMKSRD
0501: LRMKATNELL NNMRVIKFQA WEEYFGNKIG KFREAEHGWI GKFLYYFAVN MGVLGSAPLL VTVLTFGSAT LLGVPLNAGS VFTITSVIKI LQEPVRTFPQ
0601: ALIVISQAMI SLGRLNEFLT SKEMDEGAVE RVEGCDGDTA VEIKDGEFSW DDADGNVALR VEEMKIKKGD HAAVVGTVGS GKSSLLASVL GEMFKISGKV
0701: RVCGSIAYVA QTSWIQNATI QDNILFGLPM NREKYREAIR VCCLEKDLEM MEHGDQTEIG ERGINLSGGQ KQRVQLARAV YQDCDIYLLD DVLSAVDAQT
0801: GSFIFKECIM GALKNKTILL VTHQVDFLHN VDCIMVMREG KIVQSGKYDE LLKAGLDFGA LVAAHESSMG IAESSDTGGE NSAQSPKLAR IPSKEKENAD
0901: EKQPQEQSKS DKASAKLIED EERETGRVNL KVYKHYFTEA FGWWGVVLML AMSLAWILSF LASDYWLAIG TAEDSAFPPS TFIIVYACIA GLVCTVVMTR
1001: SLLFTYWGLK TSQSFFSGML ESILHAPMSF FDTTPSGRIL SRVSTDILWV DISIPMLVNF VMITYFSVIS ILIVTCQNAW ETVFLLIPLF WLNNWYRKYY
1101: LASSRELTRL DSITKAPVIH HFSETIAGVM TIRGFRKQTA FCQENIDKVN ASLRMDFHNN GANEWLCFRL DYMGVVFLCI ATSFMIFLPS AIIKPEYVGL
1201: SLSYGLALSS LLAFTISMTC SVENKMVSVE RIKQFTNLPS EAPWKIADKT PPQNWPSQGT IVLSNLQVRY RPNTPLVLKG ISLTIEGGEK IGVVGRTGSG
1301: KSTLIQVLFR LIEPSAGKIT VDGINICTVG LHDLRSRFGI IPQEPVLFQG TVRSNVDPLG LYSEEEIWKS LERCQLKDVV AAKPEKLEAP VVDGGDNWSV
1401: GQRQLLCLGR IMLKRSKILF MDEATASVDS QTDAVIQKII REDFADRTII SIAHRIPTVM DCDRVLVIDA GYAKEYDKPS RLLERPSLFG ALVKEYSNRS
1501: A
Best Arabidopsis Sequence Match ( AT2G47800.1 )
(BLAST)
0001: MWLLSSSPWL SELSCSYSAV VEHTSSVPVP IQWLRFVLLS PCPQRALFSA VDFIFLLCFA LHKLFSSPSS SSEINGHAEI RKPLIGIRGR TPTRTTAWFK
0101: TTVAVTVLLS FCSVVLCVLA FTGKRRTQRP WNLIDPLFWL IHAVTHLVIA VLVLHQKRFA ALNHPLSLRI YWISSFVLTS LFAVTGIFHF LSDAATSLRA
0201: EDVASFFSFP LTAFLLIASV RGITGLVTAE TNSPTKPSDA VSVEKSDNVS LYASASVFSK TFWLWMNPLL SKGYKSPLTL EQVPTLSPEH KAERLALLFE
0301: SSWPKPSENS SHPIRTTLLR CFWKEILFTA ILAIVRLGVM YVGPVLIQSF VDFTSGKRSS PWQGYYLVLI LLVAKFVEVL TTHQFNFDSQ KLGMLIRSTL
0401: ITALYKKGLK LTGSARQNHG VGQIVNYMAV DAQQLSDMML QLHAIWLMPL QVTVALVLLY GSLGASVITA VIGLTGVFVF ILLGTQRNNG YQFSLMGNRD
0501: SRMKATNEML NYMRVIKFQA WENHFNKRIL KFRDMEFGWL SKFLYSIAGN IIVLWSTPVL ISALTFATAL ALGVKLDAGT VFTTTTIFKI LQEPIRTFPQ
0601: SMISLSQAMI SLGRLDSYMM SKELSEDAVE RALGCDGNTA VEVRDGSFSW DDEDNEPALS DINFKVKKGE LTAIVGTVGS GKSSLLASVL GEMHRISGQV
0701: RVCGSTGYVA QTSWIENGTV QDNILFGLPM VREKYNKVLN VCSLEKDLQM MEFGDKTEIG ERGINLSGGQ KQRIQLARAV YQECDVYLLD DVFSAVDAHT
0801: GSDIFKKCVR GALKGKTVLL VTHQVDFLHN VDCILVMRDG KIVESGKYDE LVSSGLDFGE LVAAHETSME LVEAGADSAA VATSPRTPTS PHASSPRTSM
0901: ESPHLSDLND EHIKSFLGSH IVEDGSKLIK EEERETGQVS LGVYKQYCTE AYGWWGIVLV LFFSLTWQGS LMASDYWLAY ETSAKNAISF DASVFILGYV
1001: IIALVSIVLV SIRSYYVTHL GLKTAQIFFR QILNSILHAP MSFFDTTPSG RILSRASTDQ TNVDILIPFM LGLVVSMYTT LLSIFIVTCQ YAWPTAFFVI
1101: PLGWLNIWYR NYYLASSREL TRMDSITKAP IIHHFSESIA GVMTIRSFRK QELFRQENVK RVNDNLRMDF HNNGSNEWLG FRLELVGSWV LCISALFMVL
1201: LPSNVIRPEN VGLSLSYGLS LNSVLFFAIY MSCFVENKMV SVERIKQFTD IPSESEWERK ETLPPSNWPF HGNVHLEDLK VRYRPNTPLV LKGITLDIKG
1301: GEKVGVVGRT GSGKSTLIQV LFRLVEPSGG KIIIDGIDIS TLGLHDLRSR FGIIPQEPVL FEGTVRSNID PTEQYSDEEI WKSLERCQLK DVVATKPEKL
1401: DSLVVDNGEN WSVGQRQLLC LGRVMLKRSR LLFLDEATAS VDSQTDAVIQ KIIREDFASC TIISIAHRIP TVMDGDRVLV IDAGKAKEFD SPARLLERPS
1501: LFAALVQEYA LRSAGI
Arabidopsis Description
ABCC4ABC transporter C family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DM58]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.