CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
peroxisome 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01233	Soybean	cytosol, endoplasmic reticulum, plasma membrane	81.94	81.62
CDY71198	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	27.75	71.34
CDX82557	Canola	plasma membrane	27.52	71.31
CDY51899	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.59	70.77
KRH73882	Soybean	plasma membrane	68.79	69.27
CDX82552	Canola	plasma membrane	64.49	68.16
PGSC0003DMT400057099	Potato	endoplasmic reticulum, plasma membrane	66.18	65.23
VIT_19s0015g00040.t01	Wine grape	plasma membrane	54.04	65.21
KXG31741	Sorghum	plasma membrane	61.26	63.61
KRG99624	Soybean	plasma membrane	69.79	61.02
KRH46626	Soybean	plasma membrane	68.18	60.71
KRH73881	Soybean	plasma membrane	69.33	60.42
KRH14256	Soybean	plasma membrane	69.33	60.37
TraesCS1A01G310100.1	Wheat	cytosol	34.28	59.15
Bra001490.1-P	Field mustard	plasma membrane	67.1	59.03
Bra001488.1-P	Field mustard	plasma membrane, plastid	66.33	57.8
OQU92792	Sorghum	plasma membrane	60.88	57.77
KRH46324	Soybean	plasma membrane	66.64	57.68
Os02t0288400-00	Rice	plasma membrane	56.96	57.62
KRH46325	Soybean	plasma membrane	66.26	57.62
AT3G13080.1	Thale cress	plasma membrane, plastid	66.95	57.53
TraesCS1D01G309600.1	Wheat	peroxisome	56.42	57.17
KRH73880	Soybean	plasma membrane	53.88	57.13
TraesCS1B01G321200.1	Wheat	peroxisome	56.19	56.93
TraesCS2D01G420400.1	Wheat	plasma membrane	55.73	56.51
GSMUA_Achr10P...	Banana	plasma membrane	55.65	56.47
Bra039368.1-P	Field mustard	plasma membrane	64.1	56.47
HORVU3Hr1G024210.3	Barley	vacuole	61.8	56.46
TraesCS2B01G442400.1	Wheat	plasma membrane	54.34	56.02
Zm00001d020666_P004	Maize	plasma membrane	56.42	55.73
TraesCS4B01G253200.1	Wheat	plasma membrane	61.88	54.32
Bra034706.1-P	Field mustard	plasma membrane	61.49	54.31
TraesCS3D01G129900.2	Wheat	plasma membrane	62.41	54.24
TraesCS4A01G051100.1	Wheat	plasma membrane	61.95	54.17
TraesCS3B01G148100.2	Wheat	plasma membrane, plastid	62.41	54.13
Os01t0173900-01	Rice	plasma membrane	62.57	54.09
TraesCS4D01G253300.3	Wheat	plasma membrane	61.64	54.04
TraesCS3A01G129000.1	Wheat	plastid	62.11	54.01
AT3G13100.1	Thale cress	plasma membrane	61.95	53.99
Zm00001d008733_P001	Maize	plasma membrane	61.8	53.67
HORVU3Hr1G085890.7	Barley	plasma membrane	60.49	53.57
TraesCS3D01G356300.2	Wheat	plasma membrane	60.34	53.37
TraesCS3B01G395000.2	Wheat	plasma membrane	60.11	53.27
CDY43395	Canola	plasma membrane	59.26	52.63
Bra039348.1-P	Field mustard	plasma membrane	58.88	52.36
CDY63884	Canola	plasma membrane	49.35	52.15
TraesCS3A01G362500.1	Wheat	plasma membrane	57.26	51.7
KXG40096	Sorghum	plasma membrane	59.72	51.42
Zm00001d048327_P001	Maize	cytosol	1.61	51.22
Zm00001d048329_P003	Maize	plasma membrane	59.49	50.95
KRH19633	Soybean	plasma membrane	52.11	44.69
CDY23565	Canola	plastid	59.03	44.21
CDY44021	Canola	plastid	58.88	44.2
KRG91620	Soybean	plasma membrane	42.04	44.11
KRG95750	Soybean	plasma membrane	52.04	44.05
KRH67468	Soybean	endoplasmic reticulum, plasma membrane, vacuole	52.04	43.99
KRH48930	Soybean	endoplasmic reticulum	50.35	43.58
KRH66359	Soybean	plasma membrane	49.58	42.38
KRH42626	Soybean	plasma membrane	46.35	41.44
KRH58734	Soybean	plasma membrane	46.12	41.32
KRH35194	Soybean	endoplasmic reticulum, nucleus, plasma membrane	42.43	37.32
KRH47149	Soybean	plasma membrane	41.35	36.75
KRH08764	Soybean	plasma membrane	41.43	36.39
KRH08755	Soybean	plasma membrane	41.81	36.19
KRH12057	Soybean	endoplasmic reticulum	40.81	35.38
KRH37107	Soybean	endoplasmic reticulum	40.81	35.26
KRH31883	Soybean	plastid	40.51	35.11
KRG96433	Soybean	endoplasmic reticulum	39.43	34.11
KRH23646	Soybean	plasma membrane	30.82	27.32
KRH21096	Soybean	endoplasmic reticulum	32.82	26.36
KRH11151	Soybean	plasma membrane	32.74	26.3

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02010898	EnsemblPlantsGene:GLYMA_18G080900	GO:GO:0000166	GO:GO:0000325
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	UniProt:I1N0D0	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	EnsemblPlants:KRG98556
ProteinID:KRG98556	ProteinID:KRG98556.1	ProteinID:KRG98557.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24223	PANTHER:PTHR24223:SF181	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000295E116	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:7767322..7773702

Molecular Weight (calculated)

145009.0 Da

IEP (calculated)

6.918

GRAVY (calculated)

0.120

Length

1301 amino acids

Sequence
(BLAST)

0001: MAKLASLEEP LLNGDSKVQN NSDPSKTKGN NYSIAGVFSI LTFSWISPII TLGNEKTLEH EDLPLLATDD SAYGVFPTFR NKLESECGSV RNVTTLKLVK
0101: VLFLSTWQGI LLSGLFALLY TCASYVGPFL IEIFVQYLNG EQKFKNEGYV LAMAFVAAKL VECLSQRHWM FRFQQVGVRM QSKLVAMIYA KGLTLSCQSK
0201: EVRSTGEIIN LMTVDAERIG EFCWYMHDPW MCVLQVALAL LILYRSVGVA SIAALAATVI VMLLNFPVSS LQEKFQGKVM EFKDKRMKAT SEILKNIRIL
0301: KLQAWEMKFL SKIIQLRKTE EIWLKKFLAS TAIIKFLFHN APTFIAVVTF GACALIGIPL ESGKVLSALA TFRILQMPIY GLPDTISMIA QTKVSLERIA
0401: SFLRLEELQT DVVEKLPWGS SDKAIELVDG YFSWDLSSPN TTLKNINLTI FHGMRVAVCG TVGSGKSSLL SCIIGEVPKI SGTLKICGTK AYVSQSPWIQ
0501: GGKIEDNILF GKEMDRGKYK KVLEACSLTK DLEILPFGDQ TIIGEKGINL SGGQKQRVQI ARALYQDADV YLFDDPFSAV DAHTGSHLFK ECMLGLLKSK
0601: TVIYITHQVE FLPDADLILV MREGSITQSG KYNDILKTGT DLMELVGAHR EALSSIKSLE RKPTFKISST SEEDPNSLSD FELEKNVENT NDQIDKSNDT
0701: VEPQGQLVQE EEREKGRVGF KVYWKYITTA YGGTLVPFIL LSQTLTISFQ IASNYWMTVA TPVSATAEPD IRSFTLMVVY VALAVGSSIF TFARAFLAAI
0801: AGYKTATVLF NKMHLSVFRA PISFFDATPS GRILNRASTD QSTLDMYIAD ILWAVTLNLV TLFGNIFVMS QAAWQVFIVL IPVMAACIWY QRYYSASARE
0901: LARLVGTCQA PVIQHFSETI SGSTTIRSFE QESRFNDINM KMIDRYSQPK LYSATAIEWL NFRLDILSTL TFACCLVFLI SFPSSMTAPG IAGLAVTYGL
1001: NLNAVQTKVI WFSCNLENKI ISVERMLQYT SLPSEAPLVI KDNQPDYSWP SFGEVHIRDL QVQYAPHLPI VLRGLTCTFT AGAKTGIVGR TGSGKSTLVQ
1101: TLFRLIEPVA GQILIDSINI SFIGIHDLRS RLSIIPQDPT MFEGTIRTNL DPLEEYTDEQ IWEALYMCQL GDEVRKKEGK LDSVVTENGE NWSMGQRQLV
1201: CLGRVLLKKS KILVLDEATA SVDTATDNII QQTVKQHFSE CTVITIAHRI TSILDSDMVL FLNQGLIEEY DSPKKLLKNK SSSLAQLVEE YTRRSNSGFG
1301: N

Best Arabidopsis Sequence Match ( AT3G13080.1 )
(BLAST)

0001: MDFLGSTTGS GTLAMLFSFS ESILPLDSRS FLLKPLFLRW LSGFLHSVLL LVLFFSWVRK KIRGDSGVTE SLKDRRDFGF KSALFCSLAL SLLNLVLMSL
0101: SGFYWYESGW LDNEQLVSSL GFLLGMVSWG VLSICLHRCR DCEHKKAPFL LRLWLVFYLV VSCYSLVVDF VMYERRETVP VHLLVFDIVA FIAAVFLGYV
0201: AVLKKDRSNS NGVLEEPLLN GGDSRVGGDD SVELNKTNGS GEATPYSRAG ILSLLTFSWM SPLIDIGNKK TLDLEDVPQL HDTDSVVGLA PKFRSMLESP
0301: DGGERSGVTT FKLIKALYFT AQWEILVTAF FAFIYTVASY VGPALIDTFV QYLNGRRQYN HEGYVLVITF FAAKIVECLS QRHWFFRLQK VGIRMRSALV
0401: AMIYEKGLTL SCQSKQGRTS GEIINFMTVD AERIGNFSWY MHDPWMVLLQ VGLALWILYR NLGLASIAAL VATIIVMLIN FPFGRMQERF QEKLMEAKDS
0501: RMKSTSEILR NMRILKLQGW EMKFLSKIFD LRKSEEGWLK KYVYNSAVIS FVFWGAPTLV SVSTFGACIL LGIPLESGKI LSALATFRIL QEPIYNLPDT
0601: ISMIVQTKVS LDRLASYLCL DNLQPDIVER LPKGSSDVAV EVINSTLSWD VSSSNPTLKD INFKVFPGMK VAVCGTVGSG KSSLLSSLLG EVPKVSGSLK
0701: VCGTKAYVAQ SPWIQSGKIE DNILFGKPME RERYDKVLEA CSLSKDLEIL SFGDQTVIGE RGINLSGGQK QRIQIARALY QDADIYLFDD PFSAVDAHTG
0801: SHLFKEVLLG LLCSKSVIYV THQVEFLPAA DLILVMKDGR ISQAGKYNDI LNSGTDFMEL IGAHQEALAV VDSVDANSVS EKSALGQENV IVKDAIAVDE
0901: KLESQDLKND KLESVEPQRQ IIQEEEREKG SVALDVYWKY ITLAYGGALV PFILLGQVLF QLLQIGSNYW MAWATPVSED VQAPVKLSTL MIVYVALAFG
1001: SSLCILLRAT LLVTAGYKTA TELFHKMHHC IFRSPMSFFD STPSGRIMSR ASTDQSAVDL ELPYQFGSVA ITVIQLIGII GVMSQVSWLV FLVFIPVVAA
1101: SIWYQRYYIA AARELSRLVG VCKAPLIQHF SETISGATTI RSFSQEFRFR SDNMRLSDGY SRPKFYTAGA MEWLCFRLDM LSSLTFVFSL VFLVSIPTGV
1201: IDPSLAGLAV TYGLSLNTLQ AWLIWTLCNL ENKIISVERI LQYASVPSEP PLVIESNRPE QSWPSRGEVE IRDLQVRYAP HMPLVLRGIT CTFKGGLRTG
1301: IVGRTGSGKS TLIQTLFRIV EPSAGEIRID GVNILTIGLH DLRLRLSIIP QDPTMFEGTM RSNLDPLEEY TDDQIWEALD KCQLGDEVRK KEQKLDSSVS
1401: ENGDNWSMGQ RQLVCLGRVL LKRSKILVLD EATASVDTAT DNLIQKTLRE HFSDCTVITI AHRISSVIDS DMVLLLSNGI IEEYDTPVRL LEDKSSSFSK
1501: LVAEYTSRSS SSFD

Arabidopsis Description

ABCC3MRP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VHA7]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.