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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 3
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:vacuole
Any Predictor:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
TargetP:secretory
YLoc:plasma membrane
vacuole: 19391183
msms PMID: 19391183 doi
T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia
Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G129000.1 Wheat plastid 96.91 92.25
TraesCS3D01G129900.2 Wheat plasma membrane 96.42 91.72
TraesCS3B01G148100.2 Wheat plasma membrane, plastid 96.56 91.67
KXG31741 Sorghum plasma membrane 77.11 87.63
Zm00001d048327_P001 Maize cytosol 2.39 82.93
OQU92792 Sorghum plasma membrane 78.16 81.18
Os01t0173900-01 Rice plasma membrane 85.53 80.93
Zm00001d008733_P001 Maize plasma membrane 83.43 79.31
HORVU3Hr1G085890.7 Barley plasma membrane 78.37 75.97
KXG40096 Sorghum plasma membrane 78.72 74.19
CDY71198 Canola endoplasmic reticulum, mitochondrion, plasma membrane 26.33 74.11
CDX82557 Canola plasma membrane 25.91 73.51
CDY51899 Canola endoplasmic reticulum, plasma membrane, vacuole 27.74 72.61
Zm00001d048329_P003 Maize plasma membrane 76.47 71.69
CDX82552 Canola plasma membrane 60.53 70.02
KRH73882 Soybean plasma membrane 61.52 67.8
PGSC0003DMT400057099 Potato endoplasmic reticulum, plasma membrane 60.88 65.68
GSMUA_Achr10P... Banana plasma membrane 58.71 65.21
VIT_19s0015g00040.t01 Wine grape plasma membrane 48.03 63.45
KRG99624 Soybean plasma membrane 64.61 61.83
KRG98556 Soybean nucleus 56.46 61.8
KRH46626 Soybean plasma membrane 62.99 61.4
Bra001490.1-P Field mustard plasma membrane 63.76 61.39
Bra001488.1-P Field mustard plasma membrane, plastid 63.9 60.95
KRH14256 Soybean plasma membrane 63.83 60.84
AT3G13080.1 Thale cress plasma membrane, plastid 64.61 60.77
KRH73881 Soybean plasma membrane 63.69 60.75
Bra039368.1-P Field mustard plasma membrane 61.59 59.38
KRH01233 Soybean cytosol, endoplasmic reticulum, plasma membrane 54.35 59.26
KRH73880 Soybean plasma membrane 49.65 57.62
KRH46325 Soybean plasma membrane 60.39 57.49
KRH46324 Soybean plasma membrane 60.32 57.15
Bra034706.1-P Field mustard plasma membrane 57.44 55.53
AT3G13100.1 Thale cress plasma membrane 57.79 55.12
CDY63884 Canola plasma membrane 47.47 54.91
CDY43395 Canola plasma membrane 56.18 54.61
Bra039348.1-P Field mustard plasma membrane 55.62 54.14
HORVU4Hr1G084290.1 Barley peroxisome, plastid 49.23 48.61
CDY44021 Canola plastid 54.92 45.12
CDY23565 Canola plastid 54.71 44.85
HORVU2Hr1G105430.1 Barley cytosol, peroxisome, plasma membrane 48.24 44.67
HORVU2Hr1G009680.2 Barley plastid 33.71 43.32
HORVU3Hr1G088900.8 Barley plasma membrane, vacuole 45.15 42.98
HORVU7Hr1G088210.25 Barley plasma membrane 40.66 39.25
HORVU3Hr1G022850.3 Barley plasma membrane 40.1 38.87
HORVU7Hr1G024960.12 Barley golgi 39.54 37.91
HORVU2Hr1G022560.5 Barley mitochondrion 39.47 36.66
HORVU2Hr1G009580.3 Barley plastid 34.55 33.31
HORVU7Hr1G030540.15 Barley vacuole 28.37 27.69
HORVU2Hr1G103620.1 Barley plasma membrane 31.53 27.58
Protein Annotations
Gene3D:1.20.1560.10MapMan:24.1.3.1.2Gene3D:3.40.50.300UniProt:A0A287KG25InterPro:AAA+_ATPaseInterPro:ABC1_TM_dom
InterPro:ABC1_TM_sfInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085
EnsemblPlantsGene:HORVU3Hr1G024210EnsemblPlants:HORVU3Hr1G024210.3InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640InterPro:P-loop_NTPase
PFAM:PF00005PFAM:PF00664ScanProsite:PS00211PFscan:PS50893PFscan:PS50929PANTHER:PTHR24223
PANTHER:PTHR24223:SF181SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelixUniParc:UPI000B474FB8
SEG:seg:::::
Description
No Description!
Coordinates
chrchr3H:+:92311732..92319438
Molecular Weight (calculated)
156271.0 Da
IEP (calculated)
5.929
GRAVY (calculated)
0.210
Length
1424 amino acids
Sequence
(BLAST)
0001: FAVRATWALA AFEVFLGAYS LVSWYLDNSG GGSGAGWGPP DAVADQADAA ARAVAWLLLA AYLQLQYRGR GEERFAAPLK LWWALFMLLS ALALAVHAAT
0101: SLSYGLPVPA LPWARDAVEV LAAVALVVAG FSAKTTGGSA SEEPLLNGAS EGRSDDTVDA SIFTSAGFLS VLTFSWMGPL LAVGYRKTLG LDDVPDLDHG
0201: DSVAGLLPLF KKNLEALAGD GSGPKFTAFK LTRALVRTVW WHIAVTSLYA LIYNLATYVG PYLIDSLVQY LNGDERYASK GKLLVVTFIV AKVFECLSQR
0301: HWFFRLQQAG IRARSALVSV VYQKGLSLSS SSRQSRTSGE MINIISVDAD RVGLFSWYMH DLWLVPLQVG MALFILYSTL GAASLAALGA TIVVMLANVP
0401: PMRMQEKFQQ KLMDCKDVRM KATSEILRNM RILKLQGWEM KFLSKIIDLR TTETSWLKKY LYTSTAATFV FWGAPTFVAV VTFGTCMILG IPLESGKVLS
0501: ALATFRVLQE PIYNLPDTIS MMIQTKVSLD RIASFLCLEE LPTDAVDRLP SGSSNVAIEV SNGCFSWDGS PELPTLKDLN FQAQQGMRVA VCGTVGSGKS
0601: SLLSCILGEV PKLSGEVKTC GTMAYVSQTA WIQSGKIQDN ILFGKEMDCE KYDRVLEWCS LKKDLEILPF GDKTVIGERG INLSGGQKQR IQIARALYQD
0701: ADIYLFDDPF SAVDAHTGSH LFKECLLGAL ASKTVVYVTH QIEFLPAADL ILVMKGGRIA QAGKYSDILG SGEELMELVG AHQDALTALD VIDVANGGSE
0801: TISLSLSRSV SSAEEKDRQN GNDDGDKVQS GQLVQEEERE KGRVGFWVYW KYLTLAYGGA LVPFVLIAQL LFQVLQIASN YWMAWASPVS KDAKPPVSTS
0901: TLIYVFVALA VASSLCILIR ALFLVTAAYK TATLLFNKMH MAIFRAPMSF FDSTPSGRIL NRASTDQSEV DTNIAYQMGS VAFSIIQLVG IIAVMSQVAW
1001: QVFVVFVPVI SICFGYQRYY IETARELQRL VGVCKAPIIQ HFAESITGST TIRSFGKENQ FVSTNSHLMD AYSRPKFYNA AAMEWLCFRL DTLSSFTFAF
1101: ALVFLISLPT GIIDPGIAGL AVTYGLNLNM LQAWVVWSMC NLENKIISVE RILQYISIPE EPPLSMSENK LPHNWPSEGE IQLRDVHVRY APQLPFVLKG
1201: LNVTFPGGMK TGIVGRTGSG KSTLIQALFR IVEPTVGQIL VDGVDICTIG LHDLRSRLSI IPQDPTMFEG TVRSNLDPLN EYNDDQIWEA LDNCQLGDEV
1301: RKKELKLDSP VIENGENWSV GQRQLVCLGR VILKRTKILV LDEATASVDT ATDNMIQKTL RENFSEATVI TIAHRITSVL DSDMVLLLDN GVAVERDTPA
1401: KLLENKSSLF SKLVAEYTMR ATHT
Best Arabidopsis Sequence Match ( AT3G13080.1 )
(BLAST)
0001: MDFLGSTTGS GTLAMLFSFS ESILPLDSRS FLLKPLFLRW LSGFLHSVLL LVLFFSWVRK KIRGDSGVTE SLKDRRDFGF KSALFCSLAL SLLNLVLMSL
0101: SGFYWYESGW LDNEQLVSSL GFLLGMVSWG VLSICLHRCR DCEHKKAPFL LRLWLVFYLV VSCYSLVVDF VMYERRETVP VHLLVFDIVA FIAAVFLGYV
0201: AVLKKDRSNS NGVLEEPLLN GGDSRVGGDD SVELNKTNGS GEATPYSRAG ILSLLTFSWM SPLIDIGNKK TLDLEDVPQL HDTDSVVGLA PKFRSMLESP
0301: DGGERSGVTT FKLIKALYFT AQWEILVTAF FAFIYTVASY VGPALIDTFV QYLNGRRQYN HEGYVLVITF FAAKIVECLS QRHWFFRLQK VGIRMRSALV
0401: AMIYEKGLTL SCQSKQGRTS GEIINFMTVD AERIGNFSWY MHDPWMVLLQ VGLALWILYR NLGLASIAAL VATIIVMLIN FPFGRMQERF QEKLMEAKDS
0501: RMKSTSEILR NMRILKLQGW EMKFLSKIFD LRKSEEGWLK KYVYNSAVIS FVFWGAPTLV SVSTFGACIL LGIPLESGKI LSALATFRIL QEPIYNLPDT
0601: ISMIVQTKVS LDRLASYLCL DNLQPDIVER LPKGSSDVAV EVINSTLSWD VSSSNPTLKD INFKVFPGMK VAVCGTVGSG KSSLLSSLLG EVPKVSGSLK
0701: VCGTKAYVAQ SPWIQSGKIE DNILFGKPME RERYDKVLEA CSLSKDLEIL SFGDQTVIGE RGINLSGGQK QRIQIARALY QDADIYLFDD PFSAVDAHTG
0801: SHLFKEVLLG LLCSKSVIYV THQVEFLPAA DLILVMKDGR ISQAGKYNDI LNSGTDFMEL IGAHQEALAV VDSVDANSVS EKSALGQENV IVKDAIAVDE
0901: KLESQDLKND KLESVEPQRQ IIQEEEREKG SVALDVYWKY ITLAYGGALV PFILLGQVLF QLLQIGSNYW MAWATPVSED VQAPVKLSTL MIVYVALAFG
1001: SSLCILLRAT LLVTAGYKTA TELFHKMHHC IFRSPMSFFD STPSGRIMSR ASTDQSAVDL ELPYQFGSVA ITVIQLIGII GVMSQVSWLV FLVFIPVVAA
1101: SIWYQRYYIA AARELSRLVG VCKAPLIQHF SETISGATTI RSFSQEFRFR SDNMRLSDGY SRPKFYTAGA MEWLCFRLDM LSSLTFVFSL VFLVSIPTGV
1201: IDPSLAGLAV TYGLSLNTLQ AWLIWTLCNL ENKIISVERI LQYASVPSEP PLVIESNRPE QSWPSRGEVE IRDLQVRYAP HMPLVLRGIT CTFKGGLRTG
1301: IVGRTGSGKS TLIQTLFRIV EPSAGEIRID GVNILTIGLH DLRLRLSIIP QDPTMFEGTM RSNLDPLEEY TDDQIWEALD KCQLGDEVRK KEQKLDSSVS
1401: ENGDNWSMGQ RQLVCLGRVL LKRSKILVLD EATASVDTAT DNLIQKTLRE HFSDCTVITI AHRISSVIDS DMVLLLSNGI IEEYDTPVRL LEDKSSSFSK
1501: LVAEYTSRSS SSFD
Arabidopsis Description
ABCC3MRP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VHA7]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.