Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • plasma membrane 6
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
plastid: 22908117
nucleus: 25464976
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400016069 Potato endoplasmic reticulum, plasma membrane 87.25 95.26
KRH12057 Soybean endoplasmic reticulum 61.01 60.89
Solyc09g075020.2.1 Tomato plastid 61.22 60.61
KRH37107 Soybean endoplasmic reticulum 60.55 60.23
GSMUA_Achr2P02280_001 Banana cytosol, golgi, plasma membrane 46.19 59.97
TraesCS5B01G479900.1 Wheat golgi 57.94 57.6
TraesCS2A01G056800.1 Wheat plasma membrane 38.12 57.56
TraesCS5D01G480600.1 Wheat plasma membrane 57.74 57.44
TraesCS5A01G467600.1 Wheat plasma membrane 57.68 57.41
Zm00001d009243_P001 Maize mitochondrion 57.68 57.26
KXG32483 Sorghum plasma membrane 57.61 57.08
Solyc05g014390.2.1 Tomato cytosol 10.48 55.87
Os01t0356400-01 Rice plasma membrane 55.94 54.88
Os04t0209200-01 Rice plasma membrane 46.46 54.46
HORVU2Hr1G009680.2 Barley plastid 37.92 51.26
TraesCS2B01G069000.2 Wheat plastid 50.6 49.51
Zm00001d004361_P001 Maize plasma membrane 50.67 49.41
EES10452 Sorghum plastid 50.93 49.26
Os04t0209300-01 Rice plasma membrane 49.07 48.61
TraesCS2A01G057100.1 Wheat plasma membrane 48.46 48.34
TraesCS2A01G056900.1 Wheat plasma membrane, plastid 47.53 47.88
TraesCSU01G014100.1 Wheat plasma membrane 48.0 47.81
Zm00001d025043_P004 Maize plasma membrane, plastid 48.4 47.57
HORVU2Hr1G009580.3 Barley plastid 41.26 41.84
Solyc09g064440.2.1 Tomato plastid 39.65 38.8
Solyc03g007530.2.1 Tomato plasma membrane 37.32 38.1
Solyc06g036490.1.1 Tomato plastid 30.31 38.06
Solyc10g024420.1.1 Tomato golgi, nucleus, plasma membrane 36.38 36.9
Solyc08g081890.2.1 Tomato endoplasmic reticulum, nucleus, plasma membrane 36.05 36.51
Solyc12g044820.1.1 Tomato plasma membrane 34.05 34.98
Solyc05g014380.2.1 Tomato plasma membrane 23.9 31.54
Solyc08g006880.2.1 Tomato nucleus 32.38 29.83
Solyc03g117540.2.1 Tomato extracellular 27.97 28.29
Protein Annotations
Gene3D:1.20.1560.10MapMan:24.1.3.1.2Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABC1_TM_domInterPro:ABC1_TM_sf
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSGO:GO:0000166GO:GO:0000325GO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085InterPro:IPR003439
InterPro:IPR011527InterPro:IPR036640UniProt:K4AXV8InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664
ScanProsite:PS00211PFscan:PS50893PFscan:PS50929PANTHER:PTHR24223PANTHER:PTHR24223:SF215SMART:SM00382
SUPFAM:SSF52540SUPFAM:SSF90123EnsemblPlantsGene:Solyc01g080640.2EnsemblPlants:Solyc01g080640.2.1TMHMM:TMhelixUniParc:UPI0002762543
SEG:seg:::::
Description
No Description!
Coordinates
chr1:+:79887650..79894269
Molecular Weight (calculated)
168568.0 Da
IEP (calculated)
6.830
GRAVY (calculated)
0.234
Length
1498 amino acids
Sequence
(BLAST)
0001: MVANSWLTSL DCSVSSIQSL DNSSFFSLVL TWLKFIFLSP CPQRILLSSV DLFFLFVVLL LGVKKLYSRF IKNENSLDKP LLGDERPKYR VSFWFYGSLF
0101: VVAVLAISYS VLSILAFTKG VQSGWEMAEA CFRLIHAVTY LAILILIVHE KRFVAVSHPI ALRVYWGMSC VIVFLFAVTA IVRLFFTGND LVVLRMDDIV
0201: VLVSIPLYVY LVVVSIRGSS GICEVGNDDE LISMDSNVSG YGTASLFSKA VWNWMNPILS KGYKSPLKLD EVPSLPPNFR AEKMEEFFEK NWPKSGENVK
0301: YPVLTTLIRC FWKDLVIISL LAIVQLVVMY VGPVLIQSFI KFTSGDRSNP YEGYYLVLIL LISKVLEVLS SHHFSFLSEL LGMKIRSSII TTVYKKGLRL
0401: TCSSRQAHGV GQIVNYMAVD SQQLSDMMLQ LHSLWMMPLQ IAASLLLMYY YLGVSMFAAL ILIIATLIGT LWMSSKSNQY QYHLTIKRDL RMKAINELLG
0501: NMRVIKFQAW EEHFKEKILS LRNQEFKWLS KFIYLLSCNL SLLWSMSQVI SAFTFGAAIF FKNPLDAATV FTATTVFRIL QDPIRTFPQS LMTISQAMVS
0601: LGRLDGYMTS RELDSDVVER QQGCNGSIAV EVKDGIFSWE DDGDQIVLKD INLQVRKGEL AAIVGMVGSG KSSLLASMLG ELHKISGEVR VCGSTAYVAQ
0701: TSWIQNSTIQ ENILFGSPMN NKRYKDVLRV CSLEKDLEIL EHGDQTEIGE RGINLSGGQK QRIQLARAVY QDRDIYLLDD IFSAVDAQTG SEIFKECVRG
0801: ALKDKTVVLV THQVDFLHNA DLILVMRDGQ IVQSGKYDEL LKSGMDFGDL VAAHENSMEL VESSTEASGE CLPQSSPKSP HPLTPKSPQK SQLVANGGSS
0901: SLDQQPKGSS KLIKDEERET GHVNFDVYKQ YFTEAFGWWG VVAVVIISLF WQAATMASDY WLAYETSKNH AWNPTLFIDV YSIIAGICCI FVIGRSYLVA
1001: YLGLRTAQSL FDQIINSILH APMSFFDTTP SGRILSRVST DQAYVDFMIP LFLSIVLLMY FTVIGMLFIT FQSAWPTIFL IVPLIWLNFW YRRYYIASSR
1101: ELTRLGSITK APILHHFSET VSGIMTVRCF GKEDNFFQGN VDRVNANLRM DFHSNASNEW LGLRLEFIGS ILICVATVFM VLLPSFVIPP EYVGLALSYG
1201: LPLNGVLFWA VYMSCMVENR MVSVERIKQF IRIPSEASWR IANCLPSADW PYRGDIEINN LQVRYRFNTP LVLKGISLKI NGGDKIGIVG RTGSGKSTLI
1301: QVFFRLVEPS AGTIIIDGVD ICKLGLHDLR SRFGIIPQEP ILFQGTVRSN IDPLEQYSDD EIWRSLERCQ LKDVVAAKPE KLDSPVVESG DNWSVGQRQL
1401: LCLGRVMLKN SKILFMDEAT ASVDSQTDAV IQGIIREDFA NCTIITIAHR IPTVIDCDRV LVVDDGWAKE YERPSTLLER PSLFASLVQE YSNRSTGV
Best Arabidopsis Sequence Match ( AT3G62700.1 )
(BLAST)
0001: MRWLSSTWLS DLSCSSSSVI EPSSSLPAPI QWLRFILLSP CPQRLLSSTV DVLFLLILFF FAIQKLCSSS SSRTNGEADI TKPLLGRRTR TRTTGLFKTT
0101: VVVTIVLSFC SLVLCVSAFF TTRTKLKLVD TLFWLIHAVT NVVIAVLVLH LKRFASPSHP LTLRIYWVFN FVVTTLFTVS GILHLLSDDP AAASLRADDV
0201: ASFISFPLTA VLLLVSIKGS TGVVVTTSNV TAPAKSNDVV VEKSENVSLY ASASFISKTF WLWMNPLLRK GYKSPLNLDQ VPTLSPEHRA EKLATLFESK
0301: WPKPQENSRN PVRTTLIRCF WKEIAFTAVL AIIRLSVIYV GPVLIQSFVD FTSGKRSSPS QGYYLVLILL IAKFVEVLST HQFNFNSQKL GMLIRSTLIT
0401: ALYKKGLKLT GSARQNHGVG QIVNYMAVDA QQLSDMMLQL HAIWLMPLQV AAAIVLLYNT LGPSVVTTVI GLTGIFVFIL LGTKRNNRYQ FSLMMNRDSR
0501: MKATNEMLNY MRVIKFQAWE DHFNERILKF REMEFGWLSK FLYSIAGNII VLWSTPVLIS ALTFTTAVFL GVKLDAGTVF TTTTIFKILQ EPIRTFPQSM
0601: ISLSQAMISL GRLDAYMMSR ELSEETVERS QGCDGNVAVE IKDGSFSWDD EDDEPAIENI NFEVKKGELA AIVGTVGSGK SSLLASVLGE MHKLSGKVRV
0701: CGTTAYVAQT SWIQNGTVQD NILFGLPMNR SKYNEVLKVC CLEKDMQIME FGDQTEIGER GINLSGGQKQ RIQLARAVYQ ESDVYLLDDV FSAVDAHTGS
0801: DIFKKCVRGA LKGKTILLVT HQVDFLHNVD RILVMRDGMI VQSGKYDELV SSGLDFGELV AAHETSMELV EAGSASATAA NVPMASPITQ RSISIESPRQ
0901: PKSPKVHRTT SMESPRVLRT TSMESPRLSE LNDESIKSFL GSNIPEDGSR LIKEEEREVG QVSFQVYKLY STEAYGWWGM ILVVFFSVAW QASLMASDYW
1001: LAYETSAKNE VSFDATVFIR VYVIIAAVSI VLVCLRAFYV THLGLKTAQI FFKQILNSLV HAPMSFFDTT PSGRILSRAS TDQTNVDIFI PFMIGLVATM
1101: YTTLLSIFIV TCQYAWPTVF FIIPLGWLNI WYRGYYLASS RELTRLDSIT KAPVIHHFSE SIAGVMTIRA FKKQPMFRQE NVKRVNANLR MDFHNNGSNE
1201: WLGFRLELIG SWVLCISALF MVMLPSNIIK PENVGLSLSY GLSLNGVLFW AIYLSCFIEN KMVSVERIKQ FTDIPAEAKW EIKESRPPPN WPYKGNIRLE
1301: DVKVRYRPNT PLVLKGLTID IKGGEKIGVV GRTGSGKSTL IQVLFRLVEP SGGKIIIDGI DICTLGLHDL RSRFGIIPQE PVLFEGTVRS NIDPTEKYSD
1401: EEIWKSLERC QLKDVVASKP EKLDSLVADN GENWSVGQRQ LLCLGRVMLK RSRILFLDEA TASVDSQTDA MIQKIIREDF SDCTIISIAH RIPTVMDCDR
1501: VLVIDAGKAK EYDSPVRLLE RQSLFAALVQ EYALRSAGI
Arabidopsis Description
ABCC14ABC transporter C family member 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZJ5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.