Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 2
- vacuole 2
- extracellular 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g087470.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34660.1 | Solyc01g087470.2.1 | AT3G21640.1 | 15133126 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21096 | Soybean | endoplasmic reticulum | 78.78 | 79.07 |
| KRH11151 | Soybean | plasma membrane | 78.72 | 79.01 |
| AT2G34660.1 | Thale cress | plasma membrane | 75.58 | 75.72 |
| CDY31633 | Canola | plasma membrane | 75.4 | 75.4 |
| CDX84290 | Canola | plasma membrane | 75.4 | 75.26 |
| Bra005402.1-P | Field mustard | plasma membrane | 75.22 | 75.22 |
| CDY12054 | Canola | plasma membrane | 74.78 | 74.92 |
| Bra010773.1-P | Field mustard | plasma membrane | 73.19 | 74.84 |
| CDX90247 | Canola | plasma membrane | 74.66 | 74.75 |
| CDY09591 | Canola | plasma membrane | 74.42 | 74.51 |
| Bra032385.1-P | Field mustard | plasma membrane | 74.23 | 74.37 |
| CDY02289 | Canola | plasma membrane | 74.17 | 74.31 |
| GSMUA_Achr8P33250_001 | Banana | endoplasmic reticulum, golgi, plastid | 58.12 | 74.06 |
| EES12878 | Sorghum | plasma membrane | 74.05 | 74.0 |
| Os04t0620000-01 | Rice | plasma membrane | 73.43 | 73.39 |
| Zm00001d002275_P029 | Maize | plasma membrane | 73.49 | 73.36 |
| HORVU2Hr1G103620.1 | Barley | plasma membrane | 72.94 | 72.85 |
| TraesCS1A01G404300.1 | Wheat | plasma membrane | 69.25 | 70.07 |
| GSMUA_Achr7P03410_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 58.43 | 65.29 |
| Solyc05g014390.2.1 | Tomato | cytosol | 9.16 | 53.02 |
| Solyc01g080640.2.1 | Tomato | plastid | 29.83 | 32.38 |
| Solyc09g075020.2.1 | Tomato | plastid | 29.89 | 32.12 |
| Solyc06g036490.1.1 | Tomato | plastid | 22.88 | 31.18 |
| Solyc03g007530.2.1 | Tomato | plasma membrane | 27.98 | 31.02 |
| Solyc09g064440.2.1 | Tomato | plastid | 28.97 | 30.76 |
| Solyc08g081890.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 27.74 | 30.49 |
| Solyc03g117540.2.1 | Tomato | extracellular | 26.88 | 29.51 |
| Solyc10g024420.1.1 | Tomato | golgi, nucleus, plasma membrane | 26.14 | 28.77 |
| Solyc12g044820.1.1 | Tomato | plasma membrane | 25.77 | 28.74 |
| Solyc05g014380.2.1 | Tomato | plasma membrane | 16.97 | 24.32 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.2 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0000325 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| GO:GO:1902417 | GO:GO:1902418 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | UniProt:K4CIH6 |
| InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 |
| PANTHER:PTHR24223 | PANTHER:PTHR24223:SF251 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | EnsemblPlantsGene:Solyc08g006880.2 |
| EnsemblPlants:Solyc08g006880.2.1 | TMHMM:TMhelix | UniParc:UPI000276C241 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:-:1422494..1449145
Molecular Weight (calculated)
182185.0 Da
IEP (calculated)
6.301
GRAVY (calculated)
0.065
Length
1626 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFKPSDWYC QPVANGVWSK AVENAFGAYT PCGTNTLVIS VSYLVLLALC LNRVWKMMKD LSVQRFRLRS NYYNYLLGLL AAYCTAEPLF RLVMQISALN
0101: IDGQPGLAPY EIISLTIEVL AWFSILVMTV VETKVYIREG RWSVRFAVIY CLVGDVVMLN LILPVREYYN ESVLYLYISE VAVQVLFGLL LLFYVPDVDP
0201: YPGYSPLRSD SFDNTAYEEL PEGEQICPER HANILSQILF SWMNPLMQLG YKRPLTEKDV WKLDTWDRTE TLNNSFQKSW AEESQRPKPW LLRALNRSLG
0301: GRFWWGGFWK IGNDASQFIG PLILNQLLQS MQRGDPAWIG YIYAVAIFIG VVVGVLCEAQ YFQNVMRVGY RLRSTLIAAV FRKSLRLTHE SRKNFASGKI
0401: TNLMTTDSEA LQQICQSLHT IWSAPLRIVV ALVLLYQLLG VAALIGALLL VLMFPIQTFV ISKMQKLTKE GLQRTDKRIG LMNEVLAAMD TVKSYAWEDS
0501: FQSKVQDVRN EELSWYRKAQ LLGALNSFIL NSIPVVVIVI SFGVFSLLGG DLTPARAFTS LSLFAVLRFP LFMLPNIITQ VVNANVSLKR LEELLLAEER
0601: ILLPNPPLEP GLPAISIKNG CFSWDSKAEK PTLSNINLDI PVGSLVAIVG GTGEGKTSLI SAMLGEVPAI TDSMVVVRGT VAYVPQVSWI FNATVRENIL
0701: FGSAIDAARY DRAIDVTSLR HDLELLPGGD LTEIGERGVN ISGGQKQRVS MARAVYSDSD VCIFDDPLSA LDADVGRQVF ERCIKGELKG KTRVLVTNQL
0801: HFLSQVDKII LVHDGMVKEE GTFEYLSNNG ILFQKLMENA GKMEEYTEEK ENDDDDNAND KSSKPIVNGE TNGVAKEDGK GKKEGKSVLI KQEERETGVV
0901: SSNVLMRYKN ALGGSWVVLV LFMCYFLIEA LRVGSSTWLS FWTDQSSSTR YSAGFYNLIY SLLSLGQVMV TLMNSFWLIT SSLYAAKMLH DAMLNSILRA
1001: PMVFFHTNPL GRIINRFAKD IGDIDRSVAP FVSMFLGQVF QLISTFVLIG IVSTMSLWAI MPLLVLFYGA YLYYQSTARE VKRLDSISRS PVYAQFGEAL
1101: NGLATIRAYK AYDRMANING KSVDNNIRFT LVNMSGNRWL AIRLETVGGL MIWLTATFAV MQNGRAENQE AFASTMGLLL SYALNITSLL TAVLRLASLA
1201: ENSLNAVERV GTYIELPSEG PSIIEGSRPP PGWPSAGSIQ FENVVLRYRP ELPPVLHGIS FTISPSDKVG VVGRTGAGKS SMFNALFRLV ELERGRILID
1301: DYDVSKFGLT DLRKVLGIIP QAPVLFSGTV RFNLDPFNEH NDADLWESLE RAHLKDVIRR NSLGLDAEVS EAGENFSVGQ RQLLSLARAL LRRSKILVLD
1401: EATAAVDVRT DALIQKTIRE EFKSCTMLII AHRLNTIIDC DRILLLDSGQ VLEYDTPEVL LEKEESAFSR MVQSTGAANA EYLRSLVIGG GEGNSVVKDK
1501: QLDGKRRWLA SSRWSAAAQY AISFTLSSSQ NDLVNSEIVD EDNILKKTKN AVITLQGVLE GKHDKEIEET LEQYQVSRDR WWSSFYRMVE GLSVMSKLTR
1601: KRFHPEYRAE DPNIEERTIH WDRAEM
0101: IDGQPGLAPY EIISLTIEVL AWFSILVMTV VETKVYIREG RWSVRFAVIY CLVGDVVMLN LILPVREYYN ESVLYLYISE VAVQVLFGLL LLFYVPDVDP
0201: YPGYSPLRSD SFDNTAYEEL PEGEQICPER HANILSQILF SWMNPLMQLG YKRPLTEKDV WKLDTWDRTE TLNNSFQKSW AEESQRPKPW LLRALNRSLG
0301: GRFWWGGFWK IGNDASQFIG PLILNQLLQS MQRGDPAWIG YIYAVAIFIG VVVGVLCEAQ YFQNVMRVGY RLRSTLIAAV FRKSLRLTHE SRKNFASGKI
0401: TNLMTTDSEA LQQICQSLHT IWSAPLRIVV ALVLLYQLLG VAALIGALLL VLMFPIQTFV ISKMQKLTKE GLQRTDKRIG LMNEVLAAMD TVKSYAWEDS
0501: FQSKVQDVRN EELSWYRKAQ LLGALNSFIL NSIPVVVIVI SFGVFSLLGG DLTPARAFTS LSLFAVLRFP LFMLPNIITQ VVNANVSLKR LEELLLAEER
0601: ILLPNPPLEP GLPAISIKNG CFSWDSKAEK PTLSNINLDI PVGSLVAIVG GTGEGKTSLI SAMLGEVPAI TDSMVVVRGT VAYVPQVSWI FNATVRENIL
0701: FGSAIDAARY DRAIDVTSLR HDLELLPGGD LTEIGERGVN ISGGQKQRVS MARAVYSDSD VCIFDDPLSA LDADVGRQVF ERCIKGELKG KTRVLVTNQL
0801: HFLSQVDKII LVHDGMVKEE GTFEYLSNNG ILFQKLMENA GKMEEYTEEK ENDDDDNAND KSSKPIVNGE TNGVAKEDGK GKKEGKSVLI KQEERETGVV
0901: SSNVLMRYKN ALGGSWVVLV LFMCYFLIEA LRVGSSTWLS FWTDQSSSTR YSAGFYNLIY SLLSLGQVMV TLMNSFWLIT SSLYAAKMLH DAMLNSILRA
1001: PMVFFHTNPL GRIINRFAKD IGDIDRSVAP FVSMFLGQVF QLISTFVLIG IVSTMSLWAI MPLLVLFYGA YLYYQSTARE VKRLDSISRS PVYAQFGEAL
1101: NGLATIRAYK AYDRMANING KSVDNNIRFT LVNMSGNRWL AIRLETVGGL MIWLTATFAV MQNGRAENQE AFASTMGLLL SYALNITSLL TAVLRLASLA
1201: ENSLNAVERV GTYIELPSEG PSIIEGSRPP PGWPSAGSIQ FENVVLRYRP ELPPVLHGIS FTISPSDKVG VVGRTGAGKS SMFNALFRLV ELERGRILID
1301: DYDVSKFGLT DLRKVLGIIP QAPVLFSGTV RFNLDPFNEH NDADLWESLE RAHLKDVIRR NSLGLDAEVS EAGENFSVGQ RQLLSLARAL LRRSKILVLD
1401: EATAAVDVRT DALIQKTIRE EFKSCTMLII AHRLNTIIDC DRILLLDSGQ VLEYDTPEVL LEKEESAFSR MVQSTGAANA EYLRSLVIGG GEGNSVVKDK
1501: QLDGKRRWLA SSRWSAAAQY AISFTLSSSQ NDLVNSEIVD EDNILKKTKN AVITLQGVLE GKHDKEIEET LEQYQVSRDR WWSSFYRMVE GLSVMSKLTR
1601: KRFHPEYRAE DPNIEERTIH WDRAEM
0001: MGFEFIEWYC KPVPNGVWTK QVANAFGAYT PCATDSFVLG ISQLVLLVLC LYRIWLALKD HKVERFCLRS RLYNYFLALL AAYATAEPLF RLIMGISVLD
0101: FDGPGLPPFE AFGLGVKAFA WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV GAQVLFGILL FMHLPNLDTY
0201: PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI
0601: LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GSPFDREKYE RAIDVTSLKH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE KCIKRELGQK TRVLVTNQLH
0801: FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET
0901: GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI
1001: LRAPMSFFHT NPLGRIINRF AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT AREVKRMDSI SRSPVYAQFG
1101: EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA
1201: SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI
1301: LIDDCDVGKF GLMDLRKVLG IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS VGQRQLLSLS RALLRRSKIL
1401: VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS
1501: HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA
1601: RNRMQQPDYN FEGNTFDWDN VEM
0101: FDGPGLPPFE AFGLGVKAFA WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV GAQVLFGILL FMHLPNLDTY
0201: PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI
0601: LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GSPFDREKYE RAIDVTSLKH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE KCIKRELGQK TRVLVTNQLH
0801: FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET
0901: GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI
1001: LRAPMSFFHT NPLGRIINRF AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT AREVKRMDSI SRSPVYAQFG
1101: EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA
1201: SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI
1301: LIDDCDVGKF GLMDLRKVLG IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS VGQRQLLSLS RALLRRSKIL
1401: VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS
1501: HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA
1601: RNRMQQPDYN FEGNTFDWDN VEM
Arabidopsis Description
ABCC2ABC transporter C family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42093]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.