Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G134500.3 | |
| TraesCS5B01G131200.1 | |
| TraesCS5D01G139000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34660.1 | TraesCS5A01G134500.3 | AT3G21640.1 | 15133126 |
| AT2G34660.1 | TraesCS5B01G131200.1 | AT3G21640.1 | 15133126 |
| AT2G34660.1 | TraesCS5D01G139000.1 | AT3G21640.1 | 15133126 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G103620.1 | Barley | plasma membrane | 92.78 | 91.58 |
| EES12878 | Sorghum | plasma membrane | 87.62 | 86.54 |
| Os04t0620000-01 | Rice | plasma membrane | 87.55 | 86.48 |
| Zm00001d002275_P029 | Maize | plasma membrane | 86.99 | 85.82 |
| GSMUA_Achr8P33250_001 | Banana | endoplasmic reticulum, golgi, plastid | 57.19 | 72.02 |
| KRH21096 | Soybean | endoplasmic reticulum | 70.32 | 69.75 |
| KRH11151 | Soybean | plasma membrane | 70.13 | 69.57 |
| Solyc08g006880.2.1 | Tomato | nucleus | 70.07 | 69.25 |
| AT2G34660.1 | Thale cress | plasma membrane | 69.45 | 68.76 |
| VIT_10s0003g04470.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 69.32 | 68.6 |
| CDY12054 | Canola | plasma membrane | 68.89 | 68.21 |
| CDX84290 | Canola | plasma membrane | 69.14 | 68.2 |
| CDY31633 | Canola | plasma membrane | 68.95 | 68.14 |
| Bra010773.1-P | Field mustard | plasma membrane | 67.39 | 68.11 |
| Bra005402.1-P | Field mustard | plasma membrane | 68.76 | 67.96 |
| Bra032385.1-P | Field mustard | plasma membrane | 68.58 | 67.9 |
| CDY02289 | Canola | plasma membrane | 68.51 | 67.84 |
| CDX90247 | Canola | plasma membrane | 68.51 | 67.8 |
| CDY09591 | Canola | plasma membrane | 68.51 | 67.8 |
| CDY72149 | Canola | cytosol, peroxisome, plasma membrane | 25.26 | 66.34 |
| AT1G30410.1 | Thale cress | plasma membrane | 60.98 | 65.42 |
| Bra014879.1-P | Field mustard | plasma membrane | 61.05 | 64.88 |
| CDX98202 | Canola | plasma membrane | 58.62 | 64.56 |
| GSMUA_Achr7P03410_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 57.69 | 63.71 |
| AT1G30420.1 | Thale cress | plasma membrane | 58.99 | 63.41 |
| CDY09589 | Canola | plasma membrane | 57.62 | 62.02 |
| CDY02290 | Canola | plasma membrane | 59.05 | 58.76 |
| Bra032386.1-P | Field mustard | plasma membrane | 51.15 | 56.93 |
| TraesCS2A01G056800.1 | Wheat | plasma membrane | 21.97 | 35.58 |
| TraesCS7A01G119800.1 | Wheat | plasma membrane | 18.86 | 35.36 |
| TraesCS1A01G310100.1 | Wheat | cytosol | 16.55 | 35.28 |
| TraesCS5A01G512500.2 | Wheat | endoplasmic reticulum, plasma membrane | 29.18 | 32.55 |
| TraesCS4A01G227600.1 | Wheat | cytosol, golgi, mitochondrion, plasma membrane | 23.4 | 32.27 |
| TraesCS7A01G119500.1 | Wheat | cytosol, peroxisome, plasma membrane | 24.95 | 31.57 |
| TraesCS4A01G051100.1 | Wheat | plasma membrane | 27.19 | 29.37 |
| TraesCS2A01G057100.1 | Wheat | plasma membrane | 27.44 | 29.36 |
| TraesCS3A01G129000.1 | Wheat | plastid | 27.32 | 29.34 |
| TraesCS5A01G467600.1 | Wheat | plasma membrane | 27.44 | 29.3 |
| TraesCS7A01G358100.1 | Wheat | plasma membrane | 26.82 | 29.28 |
| TraesCS3A01G123000.1 | Wheat | plasma membrane | 26.51 | 29.26 |
| TraesCS2A01G056900.1 | Wheat | plasma membrane, plastid | 27.01 | 29.19 |
| TraesCS2A01G451500.1 | Wheat | plasma membrane | 27.82 | 29.08 |
| TraesCS7A01G118900.2 | Wheat | plasma membrane | 26.57 | 28.83 |
| TraesCS3A01G362500.1 | Wheat | plasma membrane | 25.82 | 28.8 |
| TraesCS2A01G451300.1 | Wheat | plastid | 28.25 | 28.63 |
| TraesCS3A01G393500.1 | Wheat | cytosol, peroxisome, plasma membrane | 26.26 | 28.59 |
| TraesCS7A01G119000.1 | Wheat | plasma membrane | 26.63 | 28.55 |
| TraesCS2A01G128500.1 | Wheat | plasma membrane | 26.51 | 28.5 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.2 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 |
| ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24223 | PANTHER:PTHR24223:SF251 | SMART:SM00382 |
| SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1A01G404300 | EnsemblPlants:TraesCS1A01G404300.1 | TIGR:cd03244 |
| TIGR:cd03250 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:567967616..567979275
Molecular Weight (calculated)
180094.0 Da
IEP (calculated)
6.911
GRAVY (calculated)
0.058
Length
1607 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGFKPLEWYC QPVKDGAWSH AVESAFGAYT PCGIDTMVVC ISYLTLFGVC FYRTWRTTKD YKVQRYKLRS PYFNYLLGLL VVYCIAEPLY RIATGTSITN
0101: LDGQSGLAPF EITSLVIESA AWCCMLIMLL LETKIYITEL RWYIRFVVIY VLVGKAAMFN LVLPVRQYYS SSSIFYLYCS EIICQCIFGI LMLVYLPSLD
0201: PYPGYTPIRS EVLVDNTDYE PLPGGEQICP ERHANIFSWI FFSWVTPLMQ QGYRRPITDN DIWKLDNWDE TETLYSRFQK CWNDELQKPK PWLLRALHSS
0301: LGGRFWLGGF FKIGNDASQF VGPTVLSLLL ESMQKGNPSW NGYIYAFSIF AGVLLGVLAE AQYFQNVTRA GFRLRSTLIA AVFRKSLRLT NDSRKKFASG
0401: RITNLISTDA ESLQQVCQQL HNLWSAPFRI VIAMVLLYAQ LGPAALVGAI MLALLFPIQT VIISKMEKLT KEGLQRTDRR ISLMNEILAA MDTVKCYAWE
0501: QSFQSKVQDI RDDELSWFRS AQLLDALNSF ILNSIPVVVT VVSFGVYSLM GGELTAAKAF TSLSLFAVLR FPLFLLPNLI TQISSWLMRR ILLPNPPIDP
0601: ELPAISIKNG NFSWELQAER PTLSNINLDV PVGSLVAIVG STGEGKTSLI SAMLGEIPPV SGSDTSVVIH GSVAYVPQVS WIFNATVRDN ILFGSPFQPP
0701: SYGRAIDATS LRHDLDLLPG GDLTEIGERG VNISGGQKQR VLMARAVYTD SDVYLFDDPL SALDAHVGRQ VFDKCIKEEL RHKTRVLVTN QLHFLPYVDK
0801: ILLIHDGVIK EEGTFDELSN SGEQFKKLME NAGKMEEQTE EKQDESKSQD EIKHTENGGV VIADGGPQKS QDSSSKTKQG KSGLIKQEEH ETGVVSTKVL
0901: SRYKNAMGGI WAVSVLFLCY TLTETLRISS STWLSIWTDV GSLKIHGPGY YNLIFGILSF GQVLVTLTNS YWLITSSLRA AKRLHDYMLR SILRAPMVFF
1001: HTNPLGRIIN RFSKDLGDID RNLAVFVNLF MAQISQLLST FVFIGVVGTM SLWAIMPLLI LFYAAYLYYQ VSCVCPIFRG IKWSVDNPCL KAYDRMSNIN
1101: GKSMDNNIRF TLVNLSSNRW LAIRLETLGG IMIWFTATFA VMQNQRAENQ KAFASMMGLL LTYTLNITNL LTAVLRLASL AENSMNAVQR VGTYIELPSE
1201: APPVIEDNRP PPGWPSSGII KFEDVVLRYR PELPPVLHGI SFIVNGSEKV GIVGRTGAGK SSMLNALFRI VELERGRILI DDCDTSKFGI WDLRKVLGII
1301: PQAPVLFSGT IRFNLDPFSE HNDADLWEAL ERAHLKDVIR RNALGLDAEV SEAGENFSVG QRQLLSLACA LLRRAKILVL DEATAAVDVQ TDALIQKTIR
1401: EEFKSCTMLI IAHRLNTIID CDRLLILSSG KISEFDTPEN LVSNEGSAFS KMVQSTGPSN AEYLKSLVLG NGEERLRKEE SKLQDIQREW AASNRWAVAA
1501: QFALAASLAS SHSDLLSLEA ADGNNILRKT RDAVITLHSV LEGKHNTEIE ESLAEYEVPL PPDRWWSSLY KVIQGLATMS KLGRNRLRQP GYSFENHGSS
1601: SIDWDQI
0101: LDGQSGLAPF EITSLVIESA AWCCMLIMLL LETKIYITEL RWYIRFVVIY VLVGKAAMFN LVLPVRQYYS SSSIFYLYCS EIICQCIFGI LMLVYLPSLD
0201: PYPGYTPIRS EVLVDNTDYE PLPGGEQICP ERHANIFSWI FFSWVTPLMQ QGYRRPITDN DIWKLDNWDE TETLYSRFQK CWNDELQKPK PWLLRALHSS
0301: LGGRFWLGGF FKIGNDASQF VGPTVLSLLL ESMQKGNPSW NGYIYAFSIF AGVLLGVLAE AQYFQNVTRA GFRLRSTLIA AVFRKSLRLT NDSRKKFASG
0401: RITNLISTDA ESLQQVCQQL HNLWSAPFRI VIAMVLLYAQ LGPAALVGAI MLALLFPIQT VIISKMEKLT KEGLQRTDRR ISLMNEILAA MDTVKCYAWE
0501: QSFQSKVQDI RDDELSWFRS AQLLDALNSF ILNSIPVVVT VVSFGVYSLM GGELTAAKAF TSLSLFAVLR FPLFLLPNLI TQISSWLMRR ILLPNPPIDP
0601: ELPAISIKNG NFSWELQAER PTLSNINLDV PVGSLVAIVG STGEGKTSLI SAMLGEIPPV SGSDTSVVIH GSVAYVPQVS WIFNATVRDN ILFGSPFQPP
0701: SYGRAIDATS LRHDLDLLPG GDLTEIGERG VNISGGQKQR VLMARAVYTD SDVYLFDDPL SALDAHVGRQ VFDKCIKEEL RHKTRVLVTN QLHFLPYVDK
0801: ILLIHDGVIK EEGTFDELSN SGEQFKKLME NAGKMEEQTE EKQDESKSQD EIKHTENGGV VIADGGPQKS QDSSSKTKQG KSGLIKQEEH ETGVVSTKVL
0901: SRYKNAMGGI WAVSVLFLCY TLTETLRISS STWLSIWTDV GSLKIHGPGY YNLIFGILSF GQVLVTLTNS YWLITSSLRA AKRLHDYMLR SILRAPMVFF
1001: HTNPLGRIIN RFSKDLGDID RNLAVFVNLF MAQISQLLST FVFIGVVGTM SLWAIMPLLI LFYAAYLYYQ VSCVCPIFRG IKWSVDNPCL KAYDRMSNIN
1101: GKSMDNNIRF TLVNLSSNRW LAIRLETLGG IMIWFTATFA VMQNQRAENQ KAFASMMGLL LTYTLNITNL LTAVLRLASL AENSMNAVQR VGTYIELPSE
1201: APPVIEDNRP PPGWPSSGII KFEDVVLRYR PELPPVLHGI SFIVNGSEKV GIVGRTGAGK SSMLNALFRI VELERGRILI DDCDTSKFGI WDLRKVLGII
1301: PQAPVLFSGT IRFNLDPFSE HNDADLWEAL ERAHLKDVIR RNALGLDAEV SEAGENFSVG QRQLLSLACA LLRRAKILVL DEATAAVDVQ TDALIQKTIR
1401: EEFKSCTMLI IAHRLNTIID CDRLLILSSG KISEFDTPEN LVSNEGSAFS KMVQSTGPSN AEYLKSLVLG NGEERLRKEE SKLQDIQREW AASNRWAVAA
1501: QFALAASLAS SHSDLLSLEA ADGNNILRKT RDAVITLHSV LEGKHNTEIE ESLAEYEVPL PPDRWWSSLY KVIQGLATMS KLGRNRLRQP GYSFENHGSS
1601: SIDWDQI
0001: MGFEFIEWYC KPVPNGVWTK QVANAFGAYT PCATDSFVLG ISQLVLLVLC LYRIWLALKD HKVERFCLRS RLYNYFLALL AAYATAEPLF RLIMGISVLD
0101: FDGPGLPPFE AFGLGVKAFA WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV GAQVLFGILL FMHLPNLDTY
0201: PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI
0601: LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GSPFDREKYE RAIDVTSLKH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE KCIKRELGQK TRVLVTNQLH
0801: FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET
0901: GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI
1001: LRAPMSFFHT NPLGRIINRF AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT AREVKRMDSI SRSPVYAQFG
1101: EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA
1201: SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI
1301: LIDDCDVGKF GLMDLRKVLG IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS VGQRQLLSLS RALLRRSKIL
1401: VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS
1501: HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA
1601: RNRMQQPDYN FEGNTFDWDN VEM
0101: FDGPGLPPFE AFGLGVKAFA WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV GAQVLFGILL FMHLPNLDTY
0201: PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI
0601: LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GSPFDREKYE RAIDVTSLKH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE KCIKRELGQK TRVLVTNQLH
0801: FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET
0901: GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI
1001: LRAPMSFFHT NPLGRIINRF AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT AREVKRMDSI SRSPVYAQFG
1101: EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA
1201: SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI
1301: LIDDCDVGKF GLMDLRKVLG IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS VGQRQLLSLS RALLRRSKIL
1401: VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS
1501: HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA
1601: RNRMQQPDYN FEGNTFDWDN VEM
Arabidopsis Description
ABCC2ABC transporter C family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42093]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.