Factsheet for TraesCS5D01G139000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G404300.1
TraesCS2A01G033700.1
TraesCS2A01G344300.1
TraesCS2A01G521400.2
TraesCS2B01G047400.1
TraesCS2B01G341800.2
TraesCS2B01G550700.2
TraesCS2D01G033200.2
TraesCS2D01G322600.1
TraesCS2D01G523100.2
TraesCS7A01G284900.1
TraesCS7B01G181700.1
TraesCS7D01G284100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	TraesCS1A01G404300.1	AT2G34660.1	15133126
AT3G21640.1	TraesCS7A01G284900.1	AT2G36910.1	14517332
AT3G21640.1	TraesCS7B01G181700.1	AT2G36910.1	14517332
AT3G21640.1	TraesCS7D01G284100.1	AT2G36910.1	14517332
AT3G21640.1	TraesCS2A01G344300.1	AT3G28860.1	14517332
AT3G21640.1	TraesCS2A01G521400.2	AT3G28860.1	14517332
AT3G21640.1	TraesCS2B01G341800.2	AT3G28860.1	14517332
AT3G21640.1	TraesCS2B01G550700.2	AT3G28860.1	14517332
AT3G21640.1	TraesCS2D01G322600.1	AT3G28860.1	14517332
AT3G21640.1	TraesCS2D01G523100.2	AT3G28860.1	14517332
AT3G21640.1	TraesCS2A01G033700.1	AT5G52640.1	12410806
AT3G21640.1	TraesCS2B01G047400.1	AT5G52640.1	12410806
AT3G21640.1	TraesCS2D01G033200.2	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G134500.3	Wheat	cytosol	98.92	99.19
TraesCS5B01G131200.1	Wheat	cytosol	98.65	98.65
HORVU5Hr1G041060.1	Barley	cytosol, plastid	95.41	83.06
Os11t0148300-01	Rice	cytosol	83.78	82.67
EES07974	Sorghum	cytosol	81.35	81.79
Zm00001d004930_P001	Maize	mitochondrion	81.89	81.02
CDY34049	Canola	cytosol	21.35	78.22
VIT_13s0064g00580.t01	Wine grape	cytosol	70.81	71.78
GSMUA_Achr6P12690_001	Banana	cytosol	68.92	68.18
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	67.57	67.57
PGSC0003DMT400017681	Potato	cytosol	67.03	67.39
Solyc01g087470.2.1	Tomato	cytosol	58.11	66.15
KRH39924	Soybean	endoplasmic reticulum	65.95	65.95
CDY29061	Canola	cytosol	62.97	65.27
CDX78057	Canola	cytosol	62.43	65.25
Bra006895.1-P	Field mustard	cytosol	64.32	65.21
Bra012823.1-P	Field mustard	cytosol	62.16	64.43
AT3G21640.1	Thale cress	cytosol	62.97	63.84
CDX73664	Canola	cytosol	63.51	63.0
CDY64639	Canola	endoplasmic reticulum, extracellular	43.78	60.45
CDX90622	Canola	cytosol	64.32	60.25
TraesCS1D01G282500.1	Wheat	nucleus	10.27	18.81
TraesCS7D01G257300.1	Wheat	cytosol	25.95	17.17
TraesCS2D01G276000.2	Wheat	cytosol	27.03	17.04
TraesCS6D01G293400.1	Wheat	cytosol	8.65	16.41
TraesCS2D01G050300.1	Wheat	cytosol	24.86	14.18
TraesCS1D01G192100.3	Wheat	cytosol	22.97	13.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005516	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150
GO:GO:0016020	GO:GO:0048366	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF00254	PFAM:PF13181	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059
PFscan:PS50293	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS5D01G139000	EnsemblPlants:TraesCS5D01G139000.1	SEG:seg

Description

No Description!

Coordinates

chr5D:-:221311074..221314878

Molecular Weight (calculated)

41928.0 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.583

Length

370 amino acids

Sequence
(BLAST)

001: MPEDAAPIAP APASDPTAGS SDDEITVEDA PFARTELPQD GSAPPVVTTD MEVLHDKVKK QVIKEGHGKI PSKFSTCFVH YRAWVQSSMH KFEDTWQEQH
101: PVEIVIGKEK KQMSGLGIGV GHMKSGERAL LHVSWELGYG KEGSFSFPNV PPSADLIYEV ELIGFDDAKE GKARSDMTVE ERIEAADRRK LEGNDYFKEK
201: KFEEAMQQYE MAVAYMGDDF MFQLFGKYRD MALAVKNPCH LNMAACLIKQ KRFDEAIAQC SIVLSEDETN VKALFRRGKA RAELGQTESA REDFLKAKKH
301: SPEDKEIMRE LRSLAEQDKA MYQKQRELYK GLFGPRPQPK PKAKNFAVLF WQWLVSLVRY LATMFTGKND

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.