Factsheet for TraesCS2A01G033700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G414300.2
TraesCS2B01G433400.1
TraesCS2D01G411600.1
TraesCS3B01G255300.1
TraesCS3D01G227500.3
TraesCS5A01G134500.3
TraesCS5B01G131200.1
TraesCS5D01G139000.1
TraesCS7A01G360400.1
TraesCS7B01G267300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	TraesCS7A01G360400.1	AT2G26150.1	19366428
AT5G52640.1	TraesCS7B01G267300.1	AT2G26150.1	19366428
AT5G52640.1	TraesCS5A01G134500.3	AT3G21640.1	12410806
AT5G52640.1	TraesCS5B01G131200.1	AT3G21640.1	12410806
AT5G52640.1	TraesCS5D01G139000.1	AT3G21640.1	12410806
AT5G52640.1	TraesCS3B01G255300.1	AT4G11260.1	18065690
AT5G52640.1	TraesCS3D01G227500.3	AT4G11260.1	18065690
AT5G52640.1	TraesCS2A01G414300.2	AT5G51700.1	18065690
AT5G52640.1	TraesCS2B01G433400.1	AT5G51700.1	18065690
AT5G52640.1	TraesCS2D01G411600.1	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G033200.2	Wheat	golgi	98.44	97.75
TraesCS2B01G047400.1	Wheat	cytosol	97.6	96.91
Os04t0107900-02	Rice	cytosol	31.97	90.76
Zm00001d024903_P001	Maize	plasma membrane	91.23	90.34
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	89.25	90.27
EES11741	Sorghum	cytosol	91.37	90.22
GSMUA_Achr8P19130_001	Banana	cytosol	73.97	89.86
PGSC0003DMT400024594	Potato	cytosol	89.39	89.77
CDY27839	Canola	cytosol	89.11	89.36
AT5G52640.1	Thale cress	cytosol	88.4	89.29
VIT_16s0050g01150.t01	Wine grape	cytosol	88.54	88.92
VIT_02s0025g00280.t01	Wine grape	cytosol	88.4	88.9
KRH08858	Soybean	nucleus	87.84	88.84
KRH38373	Soybean	nucleus	87.84	88.84
Solyc06g036290.2.1	Tomato	nucleus, plastid	76.24	88.8
PGSC0003DMT400074377	Potato	cytosol	51.2	88.51
TraesCS7A01G242200.1	Wheat	cytosol, plastid, unclear	86.0	86.86
TraesCS5A01G260600.3	Wheat	nucleus	84.3	85.14
PGSC0003DMT400074374	Potato	cytosol	36.78	84.97
Bra003119.1-P	Field mustard	plastid	70.44	81.91
CDY50297	Canola	plastid	72.28	80.35
PGSC0003DMT400014217	Potato	cytosol	31.26	77.0
KRH04730	Soybean	cytosol	38.19	75.0
VIT_13s0106g00410.t01	Wine grape	cytosol	9.9	57.38
TraesCS1A01G154800.1	Wheat	endoplasmic reticulum	9.76	45.7
TraesCS3A01G119400.1	Wheat	extracellular	9.76	45.7
TraesCS1A01G131700.1	Wheat	endoplasmic reticulum	9.62	45.03
TraesCS3A01G155700.1	Wheat	endoplasmic reticulum, extracellular	9.62	45.03
TraesCS5A01G251000.1	Wheat	plastid	43.85	39.69
TraesCS5A01G101900.2	Wheat	mitochondrion	42.43	36.76
VIT_05s0094g00110.t01	Wine grape	nucleus, peroxisome, plastid	11.32	29.85

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890
InterPro:IPR037196	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	EnsemblPlantsGene:TraesCS2A01G033700	EnsemblPlants:TraesCS2A01G033700.1	TIGR:cd00075	SEG:seg

Description

No Description!

Coordinates

chr2A:-:15001869..15004471

Molecular Weight (calculated)

81135.2 Da

IEP (calculated)

4.655

GRAVY (calculated)

-0.606

Length

707 amino acids

Sequence
(BLAST)

001: MASDVQMETE TFAFQAEINQ LLSLIINTFY SNKEIFLREL ISNSSDALDK IRFESLTDKS KLDAQPELFI RLVPDKANKT LSIIDSGVGM TKSDLVNNLG
101: TIARSGTKEF MEALQAGADV SMIGQFGVGF YSAYLVADKV VVTTKHNDDE QYVWESQAGG SFTVTLDTEG ERLGRGTKIT LFLKDDQLEY LEERRLKDLV
201: KKHSEFISYP IYLWTEKTTE KEISDDEDED ASEEKKEGEV EEVDDDKDKD ESKKKTKKVK EVSHEWAQIN KQKPIWLRKP EEISKEEYAS FYKSITNDWE
301: DHLAVKHFSV EGQLEFKAVL FVPRRAPFDL FDTRKKMNNI KLYVRRVFIM DNCEELIPEW LGFVKGVVDS DDLPLNISRE TLQQNKILKV IRKNLVKKCI
401: ELFFEIAENK EDYAKFYEAF SKNLKLGVHE DSQNRAKLAD LLRYHSTKSG DELTSLKDYV TRMKEGQKDI YYITGESRKA VENSPFLERL KKRGYEVLFM
501: VDAIDEYAVG QLKEYDGKKL VSATKEGLKL DEETEEEKKR KEEKKAAFEG LCKIIKDILG DKVEKVVVSD RIVDSPCCLV TGEYGWTANM ERIMKAQALR
601: DSSMGAYMSS KKTMEINPEN GIMEELRKRA DADKNDKSVK DLVMLLFETA LLTSGFSLDD PNTFAARIHR MLKLGLNIDD QDAEEEDADM PALEEEGAEE
701: SKMEEVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.