Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0624500-01 | Rice | cytosol, nucleus | 28.38 | 90.68 |
| HORVU3Hr1G055920.7 | Barley | cytosol | 84.62 | 85.52 |
| TraesCS3D01G227500.3 | Wheat | golgi | 92.04 | 82.03 |
| Zm00001d044172_P002 | Maize | extracellular | 75.07 | 78.39 |
| EES01101 | Sorghum | cytosol | 75.33 | 78.02 |
| Zm00001d011401_P001 | Maize | extracellular | 73.47 | 76.73 |
| GSMUA_Achr7P10850_001 | Banana | cytosol | 63.13 | 64.85 |
| Solyc03g007670.2.1 | Tomato | cytosol, extracellular | 61.54 | 62.7 |
| PGSC0003DMT400053839 | Potato | cytosol, mitochondrion | 61.54 | 62.7 |
| VIT_16s0050g01510.t01 | Wine grape | cytosol | 59.68 | 62.33 |
| CDY28656 | Canola | cytosol | 11.41 | 61.43 |
| CDY43481 | Canola | cytosol | 11.41 | 61.43 |
| CDY10892 | Canola | endoplasmic reticulum, golgi | 30.77 | 61.38 |
| Solyc06g036420.1.1 | Tomato | cytosol | 46.95 | 59.8 |
| KRH38332 | Soybean | cytosol, nucleus | 56.76 | 59.61 |
| KRH08815 | Soybean | nucleus | 56.76 | 59.61 |
| Bra019295.1-P | Field mustard | cytosol | 54.11 | 59.48 |
| CDY10946 | Canola | cytosol | 54.11 | 59.3 |
| GSMUA_Achr4P15560_001 | Banana | cytosol | 57.82 | 59.08 |
| CDX94203 | Canola | cytosol | 53.85 | 59.01 |
| GSMUA_Achr7P14290_001 | Banana | cytosol | 57.82 | 58.92 |
| AT4G23570.3 | Thale cress | cytosol | 53.85 | 57.83 |
| PGSC0003DMT400074364 | Potato | cytosol | 56.5 | 57.41 |
| CDY44117 | Canola | cytosol | 54.11 | 57.14 |
| Bra013710.1-P | Field mustard | cytosol | 48.81 | 57.14 |
| KRH35228 | Soybean | cytosol | 54.11 | 57.14 |
| CDY05137 | Canola | cytosol | 53.85 | 56.55 |
| Bra035239.1-P | Field mustard | cytosol | 52.79 | 56.06 |
| CDX90794 | Canola | cytosol | 53.32 | 55.99 |
| CDY13243 | Canola | cytosol | 52.79 | 55.9 |
| CDY10894 | Canola | cytosol | 52.52 | 55.77 |
| CDX86798 | Canola | cytosol | 52.79 | 55.74 |
| Bra000741.1-P | Field mustard | cytosol | 52.79 | 55.59 |
| AT4G11260.1 | Thale cress | cytosol | 52.52 | 55.31 |
| KRH77588 | Soybean | cytosol | 52.52 | 54.85 |
| CDY44118 | Canola | endoplasmic reticulum, plastid, vacuole | 31.3 | 53.64 |
| KRH27885 | Soybean | cytosol | 52.25 | 52.67 |
| Bra019498.1-P | Field mustard | cytosol, plastid | 27.06 | 46.15 |
| KRG94038 | Soybean | cytosol, mitochondrion, nucleus | 8.75 | 45.21 |
| VIT_02s0025g00450.t01 | Wine grape | cytosol | 38.73 | 43.2 |
| CDY63435 | Canola | cytosol, mitochondrion, nucleus | 30.5 | 39.12 |
| CDY71639 | Canola | cytosol, plastid | 11.14 | 35.29 |
| Solyc06g036410.1.1 | Tomato | cytosol | 5.84 | 33.33 |
| VIT_12s0035g01560.t01 | Wine grape | cytosol, plasma membrane, vacuole | 18.57 | 27.67 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:19.1.6.3 | Gene3D:2.60.40.790 | InterPro:CS_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:HSP20-like_chaperone | InterPro:IPR007052 | InterPro:IPR007699 | InterPro:IPR008978 | InterPro:IPR011990 |
| PFAM:PF04969 | PFAM:PF05002 | PFscan:PS51048 | PFscan:PS51203 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF496 |
| InterPro:SGS_dom | SUPFAM:SSF48452 | SUPFAM:SSF49764 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS3B01G255300 | EnsemblPlants:TraesCS3B01G255300.1 |
| TIGR:cd06466 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:411831372..411837719
Molecular Weight (calculated)
38435.9 Da
IEP (calculated)
4.711
GRAVY (calculated)
-0.548
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAASDLE SKAKEAFVDD DFELAAELYT QXXXXXXXXX XXXXXXXXXX XXXXXXXXAV ADANKAIELD PSMHKAYLRK GSACIKLEEY QTAKAALEVG
101: SSYASGDSRF TRLMKECDDR IAEEASQVPV KNAAAAVASA TSSGASSGAT TVATEAEDQD GANMENAQPT IEVPSKPKYR HDYYNTPTEV VLTIFAKGVP
201: ADSVVVDFGE QMLSVSIELP GEEPYHFQPR LFSKIVPDKC KYTVLSTKVE MRLAKAEPVT WTSLDYTGKP KAPQKINVPA ESAQRPSYPS SKSKKDWDKL
301: EAEVKKQEKD EKLDGDAALN KFFREIYSDA DEDMRRAMMK SFVESNGTVL STNWKDVGKK TVEGSPPDGM ELKKWEY
101: SSYASGDSRF TRLMKECDDR IAEEASQVPV KNAAAAVASA TSSGASSGAT TVATEAEDQD GANMENAQPT IEVPSKPKYR HDYYNTPTEV VLTIFAKGVP
201: ADSVVVDFGE QMLSVSIELP GEEPYHFQPR LFSKIVPDKC KYTVLSTKVE MRLAKAEPVT WTSLDYTGKP KAPQKINVPA ESAQRPSYPS SKSKKDWDKL
301: EAEVKKQEKD EKLDGDAALN KFFREIYSDA DEDMRRAMMK SFVESNGTVL STNWKDVGKK TVEGSPPDGM ELKKWEY
001: MAKELADKAK EAFVDDDFDV AVDLYSKAID LDPNCAEFFA DRAQAYIKLE SFTEAVADAN KAIELDPSLT KAYLRKGTAC MKLEEYRTAK TALEKGASIT
101: PSESKFKKLI DECNFLITEE EKDLVQPVPS TLPSSVTAPP VSELDVTPTA KYRHEYYQKP EEVVVTVFAK GIPKQNVNID FGEQILSVVI EVPGEDAYYL
201: QPRLFGKIIP DKCKYEVLST KIEICLAKAD IITWASLEHG KGPAVLPKPN VSSEVSQRPA YPSSKKVKDW DKLEAEVKKQ EKDEKLEGDA ALNKFFREIY
301: QNADEDMRRA MSKSFVESNG TVLSTNWQEV GTKTIESTPP DGMELKKWEI
101: PSESKFKKLI DECNFLITEE EKDLVQPVPS TLPSSVTAPP VSELDVTPTA KYRHEYYQKP EEVVVTVFAK GIPKQNVNID FGEQILSVVI EVPGEDAYYL
201: QPRLFGKIIP DKCKYEVLST KIEICLAKAD IITWASLEHG KGPAVLPKPN VSSEVSQRPA YPSSKKVKDW DKLEAEVKKQ EKDEKLEGDA ALNKFFREIY
301: QNADEDMRRA MSKSFVESNG TVLSTNWQEV GTKTIESTPP DGMELKKWEI
Arabidopsis Description
SGT1Aphosphatase-related [Source:TAIR;Acc:AT4G23570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.