Factsheet for Solyc03g007670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g092780.1.1
Solyc03g007890.2.1
Solyc11g072290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	Solyc02g092780.1.1	AT4G37460.1	21798944
AT4G11260.1	Solyc11g072290.1.1	AT5G51700.1	11847307
AT4G11260.1	Solyc11g072290.1.1	AT5G51700.1	18065690
AT4G11260.1	Solyc03g007890.2.1	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	97.03	97.03
Os01t0624500-01	Rice	cytosol, nucleus	24.59	77.12
VIT_16s0050g01510.t01	Wine grape	cytosol	70.81	72.58
Solyc06g036420.1.1	Tomato	cytosol	55.95	69.93
Solyc06g036410.1.1	Tomato	cytosol	12.43	69.7
Bra019295.1-P	Field mustard	cytosol	63.24	68.22
CDX94203	Canola	cytosol	63.24	68.02
CDY10946	Canola	cytosol	63.24	68.02
Zm00001d044172_P002	Maize	extracellular	65.41	67.04
Bra035239.1-P	Field mustard	cytosol	64.05	66.76
EES01101	Sorghum	cytosol	65.68	66.76
CDY13243	Canola	cytosol	64.05	66.57
CDX86798	Canola	cytosol	64.05	66.39
AT4G23570.3	Thale cress	cytosol	62.97	66.38
CDX90794	Canola	cytosol	64.32	66.3
Zm00001d011401_P001	Maize	extracellular	64.59	66.2
AT4G11260.1	Thale cress	cytosol	63.78	65.92
Bra000741.1-P	Field mustard	cytosol	63.51	65.64
CDY05137	Canola	cytosol	63.51	65.46
GSMUA_Achr7P10850_001	Banana	cytosol	64.86	65.4
HORVU3Hr1G055920.7	Barley	cytosol	65.68	65.15
Bra013710.1-P	Field mustard	cytosol	56.22	64.6
CDY10894	Canola	cytosol	61.89	64.51
CDY43481	Canola	cytosol	12.16	64.29
CDY28656	Canola	cytosol	12.16	64.29
GSMUA_Achr4P15560_001	Banana	cytosol	63.78	63.96
CDY44117	Canola	cytosol	61.35	63.59
CDY10892	Canola	endoplasmic reticulum, golgi	31.89	62.43
TraesCS3B01G255300.1	Wheat	cytosol	62.7	61.54
GSMUA_Achr7P14290_001	Banana	cytosol	60.54	60.54
TraesCS3D01G227500.3	Wheat	golgi	66.76	58.39
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	34.05	57.27
Bra019498.1-P	Field mustard	cytosol, plastid	29.19	48.87
CDY63435	Canola	cytosol, mitochondrion, nucleus	37.03	46.6
CDY71639	Canola	cytosol, plastid	11.89	36.97
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	21.08	30.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	InterPro:CS_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4BEI9	EMBL:KJ527597	PFAM:PF04969	PFAM:PF05002
PFAM:PF13181	PFscan:PS50293	PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496
InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764	EnsemblPlantsGene:Solyc03g007670.2	EnsemblPlants:Solyc03g007670.2.1
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000276815E	SEG:seg	:

Description

SGT1-1 [Source:UniProtKB/TrEMBL;Acc:K4BEI9]

Coordinates

chr3:+:2200919..2205536

Molecular Weight (calculated)

41246.9 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.448

Length

370 amino acids

Sequence
(BLAST)

001: MASDLETRAK EAFIDDHFEL AVDLYTQAIT LSPKNPELFA DRAQANIKLN YFTEAVVDAN KAIELDPTMS KAYLRKGLAC MKLEEYQTAK AALEIGASLA
101: PGELRFSKLM KECDEHIAEE AGELPNLSVD KTSASVVAHP ASELPDNVAI APEGAQPTVN QSHQGSAAKP KYRHEFYQKP EEVVVTIFAK GIPAKNVVVD
201: FGEQILSVSI DVPGEETYSF QPRLFGKITP AKCRYEVMST KIEIRLAKAE LLHWTSLEYT TEPVVIQRPI VSSAAPRPSY PSSKLRNVDW DKLEAEVKKE
301: EKDEKLDGDA ALNKFFRDIY QDADEDTRRA MMKSFVESNG TVLSTNWKEV GTKKVEGSPP DGMELKKWEI

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.