Factsheet for Zm00001d044172_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007938_P003
Zm00001d010529_P001
Zm00001d012420_P001
Zm00001d024903_P001
Zm00001d028630_P005
Zm00001d042922_P002
Zm00001d048687_P002
Zm00001d050655_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	Zm00001d010529_P001	AT3G12580.1	18065690
AT4G11260.1	Zm00001d012420_P001	AT3G12580.1	18065690
AT4G11260.1	Zm00001d028630_P005	AT3G12580.1	18065690
AT4G11260.1	Zm00001d042922_P002	AT3G12580.1	18065690
AT4G11260.1	Zm00001d007938_P003	AT4G37460.1	21798944
AT4G11260.1	Zm00001d048687_P002	AT5G02490.1	18065690
AT4G11260.1	Zm00001d048687_P002	AT5G02500.1	18065690
AT4G11260.1	Zm00001d050655_P001	AT5G51700.1	11847307
AT4G11260.1	Zm00001d050655_P001	AT5G51700.1	18065690
AT4G11260.1	Zm00001d024903_P001	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01101	Sorghum	cytosol	95.57	94.78
Zm00001d011401_P001	Maize	extracellular	92.8	92.8
Os01t0624500-01	Rice	cytosol, nucleus	29.09	88.98
HORVU3Hr1G055920.7	Barley	cytosol	83.38	80.7
TraesCS3B01G255300.1	Wheat	cytosol	78.39	75.07
TraesCS3D01G227500.3	Wheat	golgi	84.76	72.34
GSMUA_Achr7P10850_001	Banana	cytosol	69.25	68.12
VIT_16s0050g01510.t01	Wine grape	cytosol	66.48	66.48
Solyc03g007670.2.1	Tomato	cytosol, extracellular	67.04	65.41
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	67.04	65.41
Bra019295.1-P	Field mustard	cytosol	60.94	64.14
CDY10946	Canola	cytosol	60.94	63.95
KRH38332	Soybean	cytosol, nucleus	63.43	63.79
CDX94203	Canola	cytosol	60.66	63.66
KRH08815	Soybean	nucleus	63.16	63.51
CDY28656	Canola	cytosol	12.19	62.86
CDY43481	Canola	cytosol	12.19	62.86
KRH35228	Soybean	cytosol	62.05	62.75
GSMUA_Achr7P14290_001	Banana	cytosol	64.27	62.7
GSMUA_Achr4P15560_001	Banana	cytosol	63.99	62.6
PGSC0003DMT400074364	Potato	cytosol	63.99	62.26
Solyc06g036410.1.1	Tomato	cytosol	11.36	62.12
AT4G23570.3	Thale cress	cytosol	60.39	62.11
Bra000741.1-P	Field mustard	cytosol	61.22	61.73
CDY05137	Canola	cytosol	60.94	61.28
Bra035239.1-P	Field mustard	cytosol	60.11	61.13
CDY44117	Canola	cytosol	60.39	61.06
CDX90794	Canola	cytosol	60.66	61.0
KRH77588	Soybean	cytosol	60.94	60.94
CDY10892	Canola	endoplasmic reticulum, golgi	31.86	60.85
CDX86798	Canola	cytosol	60.11	60.78
AT4G11260.1	Thale cress	cytosol	60.11	60.61
Bra013710.1-P	Field mustard	cytosol	54.02	60.56
CDY13243	Canola	cytosol	59.28	60.11
Solyc06g036420.1.1	Tomato	cytosol	48.75	59.46
CDY10894	Canola	cytosol	57.89	58.87
KRH27885	Soybean	cytosol	60.11	58.02
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	32.41	53.18
Bra019498.1-P	Field mustard	cytosol, plastid	29.36	47.96
VIT_02s0025g00450.t01	Wine grape	cytosol	43.77	46.75
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.14	45.21
CDY63435	Canola	cytosol, mitochondrion, nucleus	33.8	41.5
CDY71639	Canola	cytosol, plastid	12.47	37.82
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.22	28.85

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100282745	MapMan:19.1.6.3	Gene3D:2.60.40.790	UniProt:B4FQV3	EMBL:BT039491
EMBL:BT055182	InterPro:CS_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	ProteinID:ONM40093.1	PFAM:PF00515	PFAM:PF04969	PFAM:PF05002	PFAM:PF13181
PFscan:PS50005	PFscan:PS50293	PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496
InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI00017B77AA	EnsemblPlantsGene:Zm00001d044172	EnsemblPlants:Zm00001d044172_P002	EnsemblPlants:Zm00001d044172_T002
SEG:seg	:	:	:	:	:

Description

SGT1 disease resistance protein homolog1 SGT1 disease resistance protein homolog1

Coordinates

chr3:-:221071103..221078032

Molecular Weight (calculated)

40360.4 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.628

Length

361 amino acids

Sequence
(BLAST)

001: MAASDLESKA KEAFVDDDFE LATELYSQAI DAGPATADLY ADRAQAHIKL GNYTEAVADA NKAIELDPMM HKAYYRKGAA CIKLEEYQTA KAALELGSSY
101: ASGDSRFARL LKECDERIAE ESSQAPVKNV EATVAATIED KEDFTNMENT PPVIEPPSKP KYRHDYYNSA TEVVLTIFAK GVPADSVVID FGEQMLSVSI
201: EVPGEEPYHF QPRLFSKIIP EKCKYQVLST KVEIRLAKAE QVTWTTLDYS GRPKTVPQKI STPAETAPRP SYPSSKAKKD WDKLEAEVKK EEKEEKLDGD
301: AALNKFFRDI YKDADEDMRR AMMKSFVESN GTVLSTNWKD VGAKKVEGSP PDGMELKKWE Y

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.