CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91395
KRH01631
KRH04486
KRH08858
KRH28408
KRH35422
KRH38373
KRH58036
KRH70484
KRH77069

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	KRH01631	AT3G12580.1	18065690
AT4G11260.1	KRH70484	AT3G12580.1	18065690
AT4G11260.1	KRH04486	AT4G37460.1	21798944
AT4G11260.1	KRH28408	AT4G37460.1	21798944
AT4G11260.1	KRH58036	AT4G37460.1	21798944
AT4G11260.1	KRH77069	AT4G37460.1	21798944
AT4G11260.1	KRG91395	AT5G51700.1	11847307
AT4G11260.1	KRH35422	AT5G51700.1	11847307
AT4G11260.1	KRG91395	AT5G51700.1	18065690
AT4G11260.1	KRH35422	AT5G51700.1	18065690
AT4G11260.1	KRH08858	AT5G52640.1	18065690
AT4G11260.1	KRH38373	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08815	Soybean	nucleus	94.99	94.99
Os01t0624500-01	Rice	cytosol, nucleus	24.23	73.73
KRH35228	Soybean	cytosol	72.42	72.83
VIT_16s0050g01510.t01	Wine grape	cytosol	70.47	70.08
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	71.03	68.92
PGSC0003DMT400074364	Potato	cytosol	68.25	66.04
CDX94203	Canola	cytosol	63.23	65.99
Bra019295.1-P	Field mustard	cytosol	62.95	65.89
AT4G23570.3	Thale cress	cytosol	64.35	65.81
CDY10946	Canola	cytosol	62.95	65.7
CDY13243	Canola	cytosol	64.62	65.17
Bra035239.1-P	Field mustard	cytosol	64.35	65.07
CDX86798	Canola	cytosol	64.35	64.71
CDX90794	Canola	cytosol	64.07	64.07
KRH77588	Soybean	cytosol	64.35	63.99
Bra000741.1-P	Field mustard	cytosol	63.79	63.97
CDY05137	Canola	cytosol	63.79	63.79
AT4G11260.1	Thale cress	cytosol	63.51	63.69
Zm00001d044172_P002	Maize	extracellular	63.79	63.43
GSMUA_Achr7P10850_001	Banana	cytosol	64.35	62.94
CDY28656	Canola	cytosol	12.26	62.86
CDY43481	Canola	cytosol	12.26	62.86
EES01101	Sorghum	cytosol	63.23	62.36
HORVU3Hr1G055920.7	Barley	cytosol	64.62	62.2
CDY44117	Canola	cytosol	61.28	61.62
GSMUA_Achr4P15560_001	Banana	cytosol	63.23	61.52
Bra013710.1-P	Field mustard	cytosol	55.15	61.49
Zm00001d011401_P001	Maize	extracellular	61.0	60.66
CDY10894	Canola	cytosol	59.89	60.56
KRH27885	Soybean	cytosol	62.95	60.43
CDY10892	Canola	endoplasmic reticulum, golgi	31.2	59.26
GSMUA_Achr7P14290_001	Banana	cytosol	60.17	58.38
TraesCS3B01G255300.1	Wheat	cytosol	59.61	56.76
TraesCS3D01G227500.3	Wheat	golgi	64.35	54.61
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	32.87	53.64
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.47	46.58
Bra019498.1-P	Field mustard	cytosol, plastid	27.58	44.8
CDY63435	Canola	cytosol, mitochondrion, nucleus	35.93	43.88
CDY71639	Canola	cytosol, plastid	11.14	33.61
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	21.73	30.83

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100194421	MapMan:19.1.6.3	Gene3D:2.60.40.790	EMBL:ACUP02005793	UniProt:B6EBD5
InterPro:CS_dom	ncoils:Coil	EMBL:FJ222388	EnsemblPlantsGene:GLYMA_09G128800	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH38332	ProteinID:KRH38332	ProteinID:KRH38332.1	PFAM:PF04969
PFAM:PF05002	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PFscan:PS51048	PFscan:PS51203
PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000181E945	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:32182266..32186487

Molecular Weight (calculated)

40667.9 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.613

Length

359 amino acids

Sequence
(BLAST)

001: MASDLEAKAK EAFVEDHFEL AVDLLSQAIH LEPNKAEFYA DRAQANIKLN NFTEAVADAN KAIELNPSLP KAYLRKGTAC MKLEEYETAK AALEVGASLS
101: PDNSRFATLI KECDKLIAEE SYTPPIIEEK ATTEDVTPKD VQQQDDLLEK PTVTVTKPKY RHEFYQKHDQ VVVTIFAKKI PKESITVDFG EQILSVSINV
201: TGEDTYVFQP RLFGKIIPSN CQYEVLSTKI EIRLAKAEPI HWTSLEFTRD IVVQQRVNAS SVTGSQRPSY PSSKQTRDWD KIEAQVKKEE KDEKLDGDAA
301: LNKFFREIYQ DADEDTRRAM KKSFVESNGT VLSTNWKEVG TKKVEGSPPD GMELKKWEY

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.