Factsheet for VIT_16s0050g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00280.t01
VIT_07s0129g00540.t01
VIT_16s0022g02040.t01
VIT_16s0050g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	VIT_07s0129g00540.t01	AT4G37460.1	21798944
AT4G11260.1	VIT_16s0022g02040.t01	AT5G51700.1	11847307
AT4G11260.1	VIT_16s0022g02040.t01	AT5G51700.1	18065690
AT4G11260.1	VIT_02s0025g00280.t01	AT5G52640.1	18065690
AT4G11260.1	VIT_16s0050g01150.t01	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0624500-01	Rice	cytosol, nucleus	25.48	77.97
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	73.41	71.62
Solyc03g007670.2.1	Tomato	cytosol, extracellular	72.58	70.81
KRH08815	Soybean	nucleus	70.08	70.47
KRH38332	Soybean	cytosol, nucleus	70.08	70.47
KRH35228	Soybean	cytosol	68.98	69.75
PGSC0003DMT400074364	Potato	cytosol	70.08	68.19
EES01101	Sorghum	cytosol	68.7	68.13
GSMUA_Achr7P10850_001	Banana	cytosol	68.14	67.03
Zm00001d044172_P002	Maize	extracellular	66.48	66.48
Solyc06g036420.1.1	Tomato	cytosol	54.29	66.22
Zm00001d011401_P001	Maize	extracellular	65.37	65.37
CDY10946	Canola	cytosol	61.77	64.83
GSMUA_Achr4P15560_001	Banana	cytosol	66.2	64.77
Bra019295.1-P	Field mustard	cytosol	61.5	64.72
HORVU3Hr1G055920.7	Barley	cytosol	66.76	64.61
CDX94203	Canola	cytosol	61.5	64.53
CDY13243	Canola	cytosol	63.16	64.04
Bra035239.1-P	Field mustard	cytosol	62.6	63.66
CDX86798	Canola	cytosol	62.6	63.31
AT4G23570.3	Thale cress	cytosol	61.5	63.25
Bra000741.1-P	Field mustard	cytosol	62.6	63.13
GSMUA_Achr7P14290_001	Banana	cytosol	64.54	62.97
AT4G11260.1	Thale cress	cytosol	62.33	62.85
CDY05137	Canola	cytosol	62.33	62.67
CDX90794	Canola	cytosol	62.33	62.67
CDY10892	Canola	endoplasmic reticulum, golgi	32.41	61.9
CDY43481	Canola	cytosol	11.91	61.43
CDY28656	Canola	cytosol	11.91	61.43
Bra013710.1-P	Field mustard	cytosol	54.29	60.87
CDY44117	Canola	cytosol	59.83	60.5
CDY10894	Canola	cytosol	59.28	60.28
TraesCS3B01G255300.1	Wheat	cytosol	62.33	59.68
TraesCS3D01G227500.3	Wheat	golgi	67.04	57.21
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	34.35	56.36
VIT_02s0025g00450.t01	Wine grape	cytosol	47.09	50.3
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.7	47.95
Bra019498.1-P	Field mustard	cytosol, plastid	29.09	47.51
CDY63435	Canola	cytosol, mitochondrion, nucleus	36.57	44.9
CDY71639	Canola	cytosol, plastid	12.19	36.97
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	24.1	34.39

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100244083	wikigene:100244083	MapMan:19.1.6.3	Gene3D:2.60.40.790	ProteinID:CBI22624
ProteinID:CBI22624.3	InterPro:CS_dom	UniProt:E0CUS4	EMBL:FN595243	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100244083	wikigene:LOC100244083	PFAM:PF04969	PFAM:PF05002
PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904
PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764	TIGR:TC52090
TIGR:TC59541	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015CC072	ArrayExpress:VIT_16s0050g01510
EnsemblPlantsGene:VIT_16s0050g01510	EnsemblPlants:VIT_16s0050g01510.t01	unigene:Vvi.58	RefSeq:XP_002276170	RefSeq:XP_002276170.1	SEG:seg

Description

No Description!

Coordinates

chr16:+:18398945..18408322

Molecular Weight (calculated)

40640.9 Da

IEP (calculated)

4.710

GRAVY (calculated)

-0.534

Length

361 amino acids

Sequence
(BLAST)

001: MASDLEIRAG KAFIDDHFEL AVDLYTQAIE INPNHAELYV ERSQANIKLN NFTEAVADAN RAIELDPSMS KAFLRKGTAC MKLEEYQTAK AAFETGASLA
101: PGDSRFTNLI KECEECIAEE TDGLPKQSVV PAPEAVESPE TVVAAEEVHQ VPMVTASKPK YRHEYYQKPQ EVVVTIFAKG VPDENVVVDF GEQILSVSID
201: VPGDVAYHFQ PRLFGKIIPD KCRYEVLSTK IEIRLAKAEE IHWTSLEFSK ENTVPQRINV STSVASQRPT YPSSKTRMVD WDKLEAQVKK EEKEEKLDGD
301: AALNKFFRDI YKDADEDTRR AMQKSFVESN GTVLSTNWKE VGSKKVEGSP PDGMEMKKWE Y

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.