Factsheet for VIT_16s0022g02040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00280.t01
VIT_02s0025g00450.t01
VIT_12s0035g01560.t01
VIT_16s0050g01150.t01
VIT_16s0050g01510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	VIT_02s0025g00450.t01	AT4G11260.1	18065690
AT5G51700.1	VIT_12s0035g01560.t01	AT4G11260.1	18065690
AT5G51700.1	VIT_16s0050g01510.t01	AT4G11260.1	18065690
AT5G51700.1	VIT_02s0025g00280.t01	AT5G52640.1	18065690
AT5G51700.1	VIT_16s0050g01150.t01	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	66.51	67.76
Zm00001d050655_P001	Maize	nucleus	28.9	67.74
KRH35422	Soybean	nucleus	68.81	66.96
KRG91395	Soybean	nucleus	67.43	65.62
CDX91605	Canola	nucleus	67.43	64.76
AT5G51700.1	Thale cress	nucleus	66.51	64.16
CDY46930	Canola	nucleus	66.51	63.88
Bra022561.1-P	Field mustard	nucleus	66.51	63.88
Os02t0535400-01	Rice	cytosol, nucleus	52.75	63.54
Bra028270.1-P	Field mustard	nucleus	66.06	62.61
CDY00493	Canola	nucleus	65.14	61.74
Solyc11g072290.1.1	Tomato	nucleus	61.93	59.73
KXG30344	Sorghum	nucleus	61.47	59.29
TraesCS2A01G414300.2	Wheat	cytosol	62.39	58.87
TraesCS2B01G433400.1	Wheat	cytosol	61.93	58.44
TraesCS2D01G411600.1	Wheat	cytosol	61.93	57.94
PGSC0003DMT400070430	Potato	nucleus	34.86	57.14
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	61.93	47.7

Protein Annotations

EntrezGene:100246439	wikigene:100246439	MapMan:26.8.2.5	ProteinID:CCB49251	ProteinID:CCB49251.1	InterPro:CHORD_dom
UniProt:F6HAJ4	EMBL:FN595506	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0017048	GO:GO:0042742	GO:GO:0050832	GO:GO:0051879
InterPro:IPR007051	EntrezGene:LOC100246439	wikigene:LOC100246439	PFAM:PF04968	PFscan:PS51401	PANTHER:PTHR12621
PANTHER:PTHR12621:SF9	TIGR:TC56400	UniParc:UPI0002108441	ArrayExpress:VIT_16s0022g02040	EnsemblPlantsGene:VIT_16s0022g02040	EnsemblPlants:VIT_16s0022g02040.t01
unigene:Vvi.6186	RefSeq:XP_002269178	RefSeq:XP_002269178.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:-:14377613..14384696

Molecular Weight (calculated)

24141.4 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.809

Length

218 amino acids

Sequence
(BLAST)

001: MEEQAAKVRC QRMGCDVMFS PDDNPDDSCQ YHDSPFFHDG MKEWSCCKKR SHDFSLFLAI PGCKTGKHTT EKPVLAKPAP PKNQVPAPAP APDASSKQTC
101: SRCQQGFFCS EHGSQAREKR LQTDLPAENN TGVQEGLAAP AKKIVDINQP QTCGNKGCGM TFKEKDNHDT ACSYHPGPAV FHDRLRGWKC CDIHVKEFDE
201: FMSIPPCTKG WHNANPAS

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.