Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050655_P001 | Maize | nucleus | 30.37 | 69.89 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 56.54 | 66.85 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 67.76 | 66.51 |
| TraesCS2A01G414300.2 | Wheat | cytosol | 71.03 | 65.8 |
| KXG30344 | Sorghum | nucleus | 69.16 | 65.49 |
| TraesCS2B01G433400.1 | Wheat | cytosol | 70.56 | 65.37 |
| TraesCS2D01G411600.1 | Wheat | cytosol | 70.56 | 64.81 |
| KRH35422 | Soybean | nucleus | 67.76 | 64.73 |
| KRG91395 | Soybean | nucleus | 67.29 | 64.29 |
| CDX91605 | Canola | nucleus | 67.29 | 63.44 |
| CDY46930 | Canola | nucleus | 66.82 | 63.0 |
| Bra022561.1-P | Field mustard | nucleus | 66.82 | 63.0 |
| AT5G51700.1 | Thale cress | nucleus | 64.95 | 61.5 |
| CDY00493 | Canola | nucleus | 65.89 | 61.3 |
| Bra028270.1-P | Field mustard | nucleus | 65.89 | 61.3 |
| Solyc11g072290.1.1 | Tomato | nucleus | 64.02 | 60.62 |
| PGSC0003DMT400070430 | Potato | nucleus | 35.51 | 57.14 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 70.09 | 53.0 |
Protein Annotations
| MapMan:26.8.2.5 | InterPro:CHORD_dom | GO:GO:0002679 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0008270 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009626 | GO:GO:0009816 | GO:GO:0009817 | GO:GO:0009987 | GO:GO:0042742 |
| GO:GO:0050821 | GO:GO:0051879 | EnsemblPlantsGene:GSMUA_AchrUn_randomG20850_001 | EnsemblPlants:GSMUA_AchrUn_randomP20850_001 | EnsemblPlants:GSMUA_AchrUn_randomT20850_001 | InterPro:IPR007051 |
| UniProt:M0UAZ3 | PFAM:PF04968 | PFscan:PS51401 | PANTHER:PTHR12621 | PANTHER:PTHR12621:SF9 | UniParc:UPI0002966305 |
Description
Putative Cysteine and histidine-rich domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20850_001]
Coordinates
chrchrUn_random:+:101156292..101162613
Molecular Weight (calculated)
23632.7 Da
IEP (calculated)
8.060
GRAVY (calculated)
-0.762
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASGGAVRC QRIGCDAMFT DEDNAEGSCR YHDSPIFHDG MKEWSCCKQR SHDFSLFLAI PGCKTGKHTT EKPVTNIVSA NTRKPVPVQS PAQNKNSVDS
101: CSRCRQGFFC SDHGSQGRPS KPSVVIETTD TEKSPAPVKK KVGINEPQTC RNKGCGKTFK EKDNHETACE YHPGPAVFHD RLRGWKCCDI HVKEFDEFLS
201: IPPCTKGWHN ADAA
101: CSRCRQGFFC SDHGSQGRPS KPSVVIETTD TEKSPAPVKK KVGINEPQTC RNKGCGKTFK EKDNHETACE YHPGPAVFHD RLRGWKCCDI HVKEFDEFLS
201: IPPCTKGWHN ADAA
001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.