Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400024594 | |
| PGSC0003DMT400053839 | |
| PGSC0003DMT400074364 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51700.1 | PGSC0003DMT400053839 | AT4G11260.1 | 18065690 |
| AT5G51700.1 | PGSC0003DMT400074364 | AT4G11260.1 | 18065690 |
| AT5G51700.1 | PGSC0003DMT400024594 | AT5G52640.1 | 18065690 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050655_P001 | Maize | nucleus | 45.86 | 65.59 |
| Solyc11g072290.1.1 | Tomato | nucleus | 92.48 | 54.42 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 60.15 | 44.2 |
| KRH35422 | Soybean | nucleus | 63.91 | 37.95 |
| CDX91605 | Canola | nucleus | 64.66 | 37.89 |
| CDY46930 | Canola | nucleus | 63.91 | 37.44 |
| Bra022561.1-P | Field mustard | nucleus | 63.91 | 37.44 |
| KRG91395 | Soybean | nucleus | 61.65 | 36.61 |
| AT5G51700.1 | Thale cress | nucleus | 60.9 | 35.84 |
| KXG30344 | Sorghum | nucleus | 60.9 | 35.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.14 | 35.51 |
| CDY00493 | Canola | nucleus | 60.9 | 35.22 |
| Bra028270.1-P | Field mustard | nucleus | 60.9 | 35.22 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 57.14 | 34.86 |
| TraesCS2B01G433400.1 | Wheat | cytosol | 59.4 | 34.2 |
| TraesCS2D01G411600.1 | Wheat | cytosol | 59.4 | 33.91 |
| TraesCS2A01G414300.2 | Wheat | cytosol | 58.65 | 33.77 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 59.4 | 27.92 |
Protein Annotations
| MapMan:26.8.2.5 | InterPro:CHORD_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0017048 | GO:GO:0042742 | GO:GO:0050832 | GO:GO:0051879 |
| InterPro:IPR007051 | UniProt:M1CM57 | PFAM:PF04968 | EnsemblPlantsGene:PGSC0003DMG400027380 | PGSC:PGSC0003DMG400027380 | EnsemblPlants:PGSC0003DMT400070430 |
| PFscan:PS51401 | PANTHER:PTHR12621 | PANTHER:PTHR12621:SF9 | UniParc:UPI000294BBC2 | : | : |
Description
Rar1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027380]
Coordinates
chr11:-:43859115..43864893
Molecular Weight (calculated)
14773.3 Da
IEP (calculated)
7.731
GRAVY (calculated)
-0.775
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYASPKDAC PRCHQGFFCS DHGSQPREAI PKASNTVTSV PSGSKTVVQQ DHPAPVKKKI DINEPQICKN KSCGKTFTEK ENHDTACSYH PGPAIFHDRM
101: KGWKCCDVHV NEFDEFMTIP PCTKGWHNAD PVS
101: KGWKCCDVHV NEFDEFMTIP PCTKGWHNAD PVS
001: MKEWSCCKQR SHDFSLFLEI PGCKTGKHTT EKPVLAKSVP KHPVAAPTSS PDANAATKDS CSRCRQGFFC SDHGSQPKEQ IKQTLNTPGQ AEEEKIEPLA
101: PPVQKAVIDI NQPQVCKNKG CGQTFKERDN HETACSHHPG PAVFHDRLRG WKCCDVHVKE FDEFMEIPPC TKGWHSSSPD PAV
101: PPVQKAVIDI NQPQVCKNKG CGQTFKERDN HETACSHHPG PAVFHDRLRG WKCCDVHVKE FDEFMEIPPC TKGWHSSSPD PAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.