Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G433400.1 | Wheat | cytosol | 95.28 | 96.1 |
| TraesCS2A01G414300.2 | Wheat | cytosol | 94.85 | 95.67 |
| KXG30344 | Sorghum | nucleus | 78.54 | 80.97 |
| Zm00001d050655_P001 | Maize | nucleus | 32.19 | 80.65 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 61.8 | 79.56 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 91.85 | 75.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.81 | 70.56 |
| AT5G51700.1 | Thale cress | nucleus | 60.94 | 62.83 |
| CDX91605 | Canola | nucleus | 60.52 | 62.11 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 57.94 | 61.93 |
| Bra022561.1-P | Field mustard | nucleus | 60.09 | 61.67 |
| CDY46930 | Canola | nucleus | 60.09 | 61.67 |
| KRG91395 | Soybean | nucleus | 59.23 | 61.61 |
| Solyc11g072290.1.1 | Tomato | nucleus | 59.66 | 61.5 |
| KRH35422 | Soybean | nucleus | 58.8 | 61.16 |
| CDY00493 | Canola | nucleus | 59.66 | 60.43 |
| Bra028270.1-P | Field mustard | nucleus | 59.66 | 60.43 |
| PGSC0003DMT400070430 | Potato | nucleus | 33.91 | 59.4 |
Protein Annotations
| MapMan:26.8.2.5 | InterPro:CHORD_dom | GO:GO:0002679 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0008270 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009626 | GO:GO:0009816 | GO:GO:0009817 | GO:GO:0009987 | GO:GO:0042742 |
| GO:GO:0050821 | GO:GO:0051879 | InterPro:IPR007051 | PFAM:PF04968 | PFscan:PS51401 | PANTHER:PTHR12621 |
| PANTHER:PTHR12621:SF9 | EnsemblPlantsGene:TraesCS2D01G411600 | EnsemblPlants:TraesCS2D01G411600.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:+:526373265..526376750
Molecular Weight (calculated)
25531.1 Da
IEP (calculated)
7.900
GRAVY (calculated)
-0.769
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAETEKSAA APAPAPAPMR CQRIGCDAMF TDDDNPDGSC HYHPSGPMFH DGMKEWSCCK QRSHDFSLFL AIPGCATGKH TTEKPVTKAV SLNSKATPPK
101: LAPIQSSKQG VETEACSRCR QGFFCSDHGS QPKAQKPVAV NGTNTEPVEK CSVPQPKKKV VNINEPRVCK NKGCGKTYKE KDNHDAACEY HPGPAVFHDR
201: NRGWKCCDVH VKEFDEFMEI PPCTKGWHNA DAV
101: LAPIQSSKQG VETEACSRCR QGFFCSDHGS QPKAQKPVAV NGTNTEPVEK CSVPQPKKKV VNINEPRVCK NKGCGKTYKE KDNHDAACEY HPGPAVFHDR
201: NRGWKCCDVH VKEFDEFMEI PPCTKGWHNA DAV
001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.