Factsheet for HORVU2Hr1G097800.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G055920.7

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	HORVU3Hr1G055920.7	AT4G11260.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G433400.1	Wheat	cytosol	78.09	95.67
TraesCS2A01G414300.2	Wheat	cytosol	77.39	94.81
TraesCS2D01G411600.1	Wheat	cytosol	75.62	91.85
Zm00001d050655_P001	Maize	nucleus	26.86	81.72
KXG30344	Sorghum	nucleus	64.66	80.97
Os02t0535400-01	Rice	cytosol, nucleus	50.88	79.56
GSMUA_AchrUn_...	Banana	nucleus	53.0	70.09
AT5G51700.1	Thale cress	nucleus	50.18	62.83
KRG91395	Soybean	nucleus	49.47	62.5
CDY46930	Canola	nucleus	49.82	62.11
CDX91605	Canola	nucleus	49.82	62.11
Bra022561.1-P	Field mustard	nucleus	49.82	62.11
KRH35422	Soybean	nucleus	49.12	62.05
VIT_16s0022g02040.t01	Wine grape	nucleus	47.7	61.93
Solyc11g072290.1.1	Tomato	nucleus	49.12	61.5
CDY00493	Canola	nucleus	49.12	60.43
Bra028270.1-P	Field mustard	nucleus	49.12	60.43
PGSC0003DMT400070430	Potato	nucleus	27.92	59.4

Protein Annotations

MapMan:26.8.2.5	UniProt:A0A287J325	InterPro:CHORD_dom	GO:GO:0002679	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008270
GO:GO:0009605	GO:GO:0009607	GO:GO:0009626	GO:GO:0009816	GO:GO:0009817	GO:GO:0009987
GO:GO:0042742	GO:GO:0050821	GO:GO:0051879	EnsemblPlantsGene:HORVU2Hr1G097800	EnsemblPlants:HORVU2Hr1G097800.8	InterPro:IPR007051
PFAM:PF04968	PFscan:PS51401	PANTHER:PTHR12621	PANTHER:PTHR12621:SF9	UniParc:UPI000B475832	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:680457446..680461502

Molecular Weight (calculated)

31078.4 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.862

Length

283 amino acids

Sequence
(BLAST)

001: PGRSPEESRT CRSLPLVVFV PCAETDSTAP AKSERGTRKK SSERERERRI AMSAETERSA AAPAPAPMRC QRIGCDAMFT DDDNPDGSCH YHPSGPLFHD
101: GMKEWSCCKQ RSHDFSLFLA IPGCATGKHT TEKPVTKAVS LNSSKATPPK SAPVQSSKQG VETEACSRCR QGFFCSDHGS QPKAQKPVAV NGTNTESVQK
201: SSVPEPKKKV VDINEPRVCK NKGCGKTYKE KDNHDAACDY HPGPAVFHDR NRGWKCCDVH VKEFDEFMEI PPCTKGWHNA DAV

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.