CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01101
EES11741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	EES01101	AT4G11260.1	18065690
AT5G51700.1	EES11741	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050655_P001	Maize	nucleus	38.05	92.47
Os02t0535400-01	Rice	cytosol, nucleus	66.37	82.87
TraesCS2A01G414300.2	Wheat	cytosol	81.86	80.09
TraesCS2B01G433400.1	Wheat	cytosol	80.97	79.22
TraesCS2D01G411600.1	Wheat	cytosol	80.97	78.54
GSMUA_AchrUn_...	Banana	nucleus	65.49	69.16
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	80.97	64.66
VIT_16s0022g02040.t01	Wine grape	nucleus	59.29	61.47
KRH35422	Soybean	nucleus	60.62	61.16
KRG91395	Soybean	nucleus	60.62	61.16
Solyc11g072290.1.1	Tomato	nucleus	61.06	61.06
PGSC0003DMT400070430	Potato	nucleus	35.84	60.9
CDX91605	Canola	nucleus	60.62	60.35
AT5G51700.1	Thale cress	nucleus	60.18	60.18
CDY00493	Canola	nucleus	61.06	60.0
Bra028270.1-P	Field mustard	nucleus	61.06	60.0
CDY46930	Canola	nucleus	60.18	59.91
Bra022561.1-P	Field mustard	nucleus	60.18	59.91

Protein Annotations

MapMan:26.8.2.5	UniProt:A0A194YQ38	InterPro:CHORD_dom	GO:GO:0002679	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008270	GO:GO:0009605
GO:GO:0009607	GO:GO:0009626	GO:GO:0009816	GO:GO:0009817	GO:GO:0009987	GO:GO:0017048
GO:GO:0042742	GO:GO:0050821	GO:GO:0050832	GO:GO:0051879	InterPro:IPR007051	EnsemblPlants:KXG30344
ProteinID:KXG30344	ProteinID:KXG30344.1	PFAM:PF04968	PFscan:PS51401	PANTHER:PTHR12621	PANTHER:PTHR12621:SF9
EnsemblPlantsGene:SORBI_3004G167100	UniParc:UPI0003C6C7EC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51717979..51724224

Molecular Weight (calculated)

24958.3 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.848

Length

226 amino acids

Sequence
(BLAST)

001: MSTTTEAAAK SGTAAPVRCQ RIGCDAVFTD DDNPEGSCQY HPSPMFHDGM KEWSCCKQRS HDFSLFLQIP GCTTGKHTTE KPITKAVSTN NPIKATPIQA
101: SKQGVGVEAC ARCRQGFFCS DHGSQPKPQK PSATDDTNKE PVEKSSVPPP KKRIDINEPR ICKNKGCGKS YKEKDNHDSA CDYHPGPAVF HDRMRGWKCC
201: DIHVKEFDEF MEIPPCTKGW HNADAV

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.