Factsheet for AT5G51700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91605	Canola	nucleus	80.09	79.74
CDY46930	Canola	nucleus	79.65	79.3
Bra022561.1-P	Field mustard	nucleus	79.65	79.3
Bra028270.1-P	Field mustard	nucleus	80.09	78.7
CDY00493	Canola	nucleus	80.09	78.7
VIT_16s0022g02040.t01	Wine grape	nucleus	64.16	66.51
Os02t0535400-01	Rice	cytosol, nucleus	52.65	65.75
GSMUA_AchrUn_...	Banana	nucleus	61.5	64.95
Solyc11g072290.1.1	Tomato	nucleus	62.83	62.83
Zm00001d050655_P001	Maize	nucleus	25.66	62.37
KRH35422	Soybean	nucleus	61.5	62.05
TraesCS2B01G433400.1	Wheat	cytosol	62.83	61.47
KRG91395	Soybean	nucleus	60.62	61.16
TraesCS2A01G414300.2	Wheat	cytosol	62.39	61.04
TraesCS2D01G411600.1	Wheat	cytosol	62.83	60.94
PGSC0003DMT400070430	Potato	nucleus	35.84	60.9
KXG30344	Sorghum	nucleus	60.18	60.18
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	62.83	50.18

Protein Annotations

MapMan:26.8.2.5	PDB:2XCM	EntrezGene:835244	ProteinID:AED96116.1	EMBL:AF192262	ArrayExpress:AT5G51700
EnsemblPlantsGene:AT5G51700	RefSeq:AT5G51700	TAIR:AT5G51700	RefSeq:AT5G51700-TAIR-G	EnsemblPlants:AT5G51700.1	TAIR:AT5G51700.1
EMBL:AY088919	ProteinID:BAB11239.1	InterPro:CHORD_dom	GO:GO:0002376	GO:GO:0002679	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0008270	GO:GO:0009605	GO:GO:0009607	GO:GO:0009626	GO:GO:0009816	GO:GO:0009817
GO:GO:0009987	GO:GO:0017048	GO:GO:0042742	GO:GO:0045087	GO:GO:0046872	GO:GO:0050821
GO:GO:0050832	GO:GO:0051879	InterPro:IPR007051	RefSeq:NP_568762.6	Symbol:PBS2	PFAM:PF04968
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS51401	PANTHER:PTHR12621	PANTHER:PTHR12621:SF9	UniProt:Q9SE33	UniParc:UPI00000A4066	:

Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]

Coordinates

chr5:-:21001144..21003286

Molecular Weight (calculated)

24962.3 Da

IEP (calculated)

7.247

GRAVY (calculated)

-0.762

Length

226 amino acids

Sequence
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.