CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86798
CDX90794
CDY05137
CDY13243
CDY27839
CDY50297
CDY63435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	CDX86798	AT4G11260.1	18065690
AT5G51700.1	CDX90794	AT4G11260.1	18065690
AT5G51700.1	CDY05137	AT4G11260.1	18065690
AT5G51700.1	CDY13243	AT4G11260.1	18065690
AT5G51700.1	CDY63435	AT4G11260.1	18065690
AT5G51700.1	CDY27839	AT5G52640.1	18065690
AT5G51700.1	CDY50297	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022561.1-P	Field mustard	nucleus	100.0	100.0
CDX91605	Canola	nucleus	97.36	97.36
CDY00493	Canola	nucleus	86.78	85.65
AT5G51700.1	Thale cress	nucleus	79.3	79.65
GSMUA_AchrUn_...	Banana	nucleus	63.0	66.82
Zm00001d050655_P001	Maize	nucleus	27.31	66.67
VIT_16s0022g02040.t01	Wine grape	nucleus	63.88	66.51
Os02t0535400-01	Rice	cytosol, nucleus	51.54	64.64
PGSC0003DMT400070430	Potato	nucleus	37.44	63.91
KRH35422	Soybean	nucleus	62.56	63.39
Solyc11g072290.1.1	Tomato	nucleus	63.0	63.27
KRG91395	Soybean	nucleus	60.79	61.61
TraesCS2B01G433400.1	Wheat	cytosol	61.67	60.61
KXG30344	Sorghum	nucleus	59.91	60.18
TraesCS2A01G414300.2	Wheat	cytosol	61.23	60.17
TraesCS2D01G411600.1	Wheat	cytosol	61.67	60.09
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	62.11	49.82

Protein Annotations

EnsemblPlants:CDY46930	EnsemblPlantsGene:GSBRNA2T00086407001	InterPro:CHORD_dom	InterPro:IPR007051	PANTHER:PTHR12621	PANTHER:PTHR12621:SF9
PFAM:PF04968	PFscan:PS51401	ProteinID:CDY46930	ProteinID:CDY46930.1	UniParc:UPI00025471A1	UniProt:A0A078I7N0
MapMan:26.8.2.5	:	:	:	:	:

Description

BnaAnng08080DBnaAnng08080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7N0]

Coordinates

chrLK032691:+:7469..9169

Molecular Weight (calculated)

25209.6 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.750

Length

227 amino acids

Sequence
(BLAST)

001: MEVRSATKLQ CQRIGCNAMF TDDDNPDGSC RFHASPFFHD GMKEWSCCKQ RSHDFTLFLE IPGCKTGKHT TEKPVLAKPA PRQPVTVPTS SPHGNAATKD
101: SCSRCRQGFF CSDHGSQPKE QTSQQALNTP VQVQGEKTES LAPAPVKKVV IDINQPQVCK NKGCGKTFKE RDNHETACSY HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SSADQAV

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.