CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73664
CDX78057
CDX83217
CDX86798
CDX90622
CDX90794
CDX91605
CDY00493
CDY05137
CDY13243
CDY21503
CDY29061
CDY34049
CDY46930
CDY63435
CDY64639

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	CDX83217	AT2G26150.1	19366428
AT5G52640.1	CDY21503	AT2G26150.1	19366428
AT5G52640.1	CDX73664	AT3G21640.1	12410806
AT5G52640.1	CDX78057	AT3G21640.1	12410806
AT5G52640.1	CDX90622	AT3G21640.1	12410806
AT5G52640.1	CDY29061	AT3G21640.1	12410806
AT5G52640.1	CDY34049	AT3G21640.1	12410806
AT5G52640.1	CDY64639	AT3G21640.1	12410806
AT5G52640.1	CDX86798	AT4G11260.1	18065690
AT5G52640.1	CDX90794	AT4G11260.1	18065690
AT5G52640.1	CDY05137	AT4G11260.1	18065690
AT5G52640.1	CDY13243	AT4G11260.1	18065690
AT5G52640.1	CDY63435	AT4G11260.1	18065690
AT5G52640.1	CDX91605	AT5G51700.1	18065690
AT5G52640.1	CDY00493	AT5G51700.1	18065690
AT5G52640.1	CDY46930	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003119.1-P	Field mustard	plastid	90.72	94.9
CDY27839	Canola	cytosol	88.21	79.57
AT5G52640.1	Thale cress	cytosol	85.85	78.0
CDY22598	Canola	cytosol	57.86	77.47
CDY06546	Canola	cytosol	8.96	77.03
CDY36775	Canola	cytosol	17.61	76.19
KRH38373	Soybean	nucleus	83.65	76.11
KRH08858	Soybean	nucleus	83.02	75.54
CDY36771	Canola	cytosol	17.45	75.51
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	82.7	75.25
CDY11962	Canola	cytosol	17.14	75.17
PGSC0003DMT400024594	Potato	cytosol	82.86	74.86
VIT_16s0050g01150.t01	Wine grape	cytosol	82.86	74.86
VIT_02s0025g00280.t01	Wine grape	cytosol	82.55	74.68
TraesCS2A01G033700.1	Wheat	plastid	80.35	72.28
TraesCS2D01G033200.2	Wheat	golgi	80.19	71.63
TraesCS2B01G047400.1	Wheat	cytosol	80.03	71.49
EES11741	Sorghum	cytosol	80.35	71.37
Zm00001d024903_P001	Maize	plasma membrane	79.87	71.15
GSMUA_Achr8P19130_001	Banana	cytosol	64.31	70.27
CDY06545	Canola	cytosol	6.6	68.85
CDY11967	Canola	cytosol	61.48	67.88
CDY06551	Canola	cytosol	58.18	64.57
CDY36807	Canola	cytosol	57.7	63.83
CDY64982	Canola	cytosol	54.87	63.57
CDY20742	Canola	cytosol	54.72	63.16
CDY11921	Canola	cytosol	52.52	62.2
CDY11961	Canola	cytosol	33.96	59.34
CDY36772	Canola	cytosol	30.19	52.89
CDY36776	Canola	cytosol	30.19	52.89
Os04t0107900-02	Rice	cytosol	18.87	48.19
CDY66279	Canola	mitochondrion	25.31	36.76
CDX99788	Canola	plastid	38.36	35.47
CDX83528	Canola	plastid	42.92	34.87
CDY08910	Canola	endoplasmic reticulum	42.92	34.87
CDY33122	Canola	plastid	42.92	34.87
CDY48069	Canola	plastid	42.77	34.56
CDY24830	Canola	endoplasmic reticulum	44.5	34.55
CDY03477	Canola	endoplasmic reticulum	44.65	34.55
CDY66280	Canola	cytosol	12.11	34.53
CDY34264	Canola	endoplasmic reticulum	44.5	34.43
CDY04167	Canola	plastid	41.04	34.16
CDX92620	Canola	endoplasmic reticulum	41.98	33.71
CDY35962	Canola	mitochondrion	41.35	32.75
CDY22132	Canola	mitochondrion	40.88	32.34
CDY10992	Canola	endoplasmic reticulum	44.18	32.26
CDY28017	Canola	mitochondrion	39.47	31.89
CDY06544	Canola	cytosol	5.03	27.83
CDY50296	Canola	cytosol	0.79	8.06

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
GO:A0A078IK70	UniProt:A0A078IK70	EnsemblPlants:CDY50297	ProteinID:CDY50297	ProteinID:CDY50297.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00096382001	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196
HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775	PANTHER:PTHR11528
PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF110942	SUPFAM:SSF54211	SUPFAM:SSF55874	UniParc:UPI0004EDCF01
SEG:seg	:	:	:	:	:

Description

BnaA10g28410DBnaA10g28410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK70]

Coordinates

chrLK032897:+:103477..105582

Molecular Weight (calculated)

73503.6 Da

IEP (calculated)

9.200

GRAVY (calculated)

-0.644

Length

636 amino acids

Sequence
(BLAST)

001: MDSLSSSLGW SQTRPTRRSL SSTGIGMTKA DLVNNLGTIA RSGTKEFMEA LQAGADVSMI GHFGVGFYSS YLVAEKVIVT TKHNDDEQYV WESQAGGSFT
101: VTRDVDGEPL GRGTKITLFL KEDQVMKSQR LKDLVKKHSE FISYPIYLWT EKQLRRRSVM MRMRTKQRKK LKAKLKKLMK RRRRTKKIKE VSHEWELINK
201: QKPIWLRKPE EISKDEYASF YKSLTNNWED HLAVKHFAVE GQLEFKVILF VPKRAPFNLF DTRKKLNNIK LYVRRVFIMD NCEELIPEYL SFVKGVVDSD
301: DLPLNISRET LQQNKILKVI RKNLVKKCLE MFNEISEKKE DYNKFYDTFS KNLKLGIHED SQNRSKIADL LRYHSTKSAD EMTSLKDYVT RMKEGQKDIF
401: YITGESKKAV ENSPFLEKLK KRGYEVLYMV DAIDEYAVGQ LKKCDGKKLV SATKEGLKLE DETEEEKKKK EEKKKSFENL CKTIKDILGD KVEKVVVSDR
501: IVYSPCCLVT GEYGWTANME NIMKAEALRD SSMSGYMSSK KTMEINPDNG IMEELRKRAE VDKNDNSVKD LVMLLFETAL LTSGFSLDEP NTFAARIHRM
601: LKLGLSIDED ENVEEDGDMP ALEEDAAEES KMEKVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.