CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11962	Canola	cytosol	45.95	23.45
CDY36771	Canola	cytosol	45.95	23.13
CDY36775	Canola	cytosol	45.95	23.13
CDY50297	Canola	plastid	77.03	8.96
CDY22598	Canola	cytosol	56.76	8.84
CDY27839	Canola	cytosol	77.03	8.09
CDY64982	Canola	cytosol	50.0	6.74
CDY11921	Canola	cytosol	48.65	6.7
CDY20742	Canola	cytosol	48.65	6.53
CDY06551	Canola	cytosol	50.0	6.46
CDY36807	Canola	cytosol	47.3	6.09
CDY11967	Canola	cytosol	45.95	5.9
CDY66280	Canola	cytosol	16.22	5.38
CDY24830	Canola	endoplasmic reticulum	35.14	3.17
CDX92620	Canola	endoplasmic reticulum	32.43	3.03
CDY03477	Canola	endoplasmic reticulum	32.43	2.92
CDY34264	Canola	endoplasmic reticulum	32.43	2.92
CDY10992	Canola	endoplasmic reticulum	32.43	2.76
CDY08910	Canola	endoplasmic reticulum	27.03	2.55
CDY28017	Canola	mitochondrion	18.92	1.78
CDX99788	Canola	plastid	16.22	1.74
CDY06545	Canola	cytosol	1.35	1.64
CDY35962	Canola	mitochondrion	17.57	1.62
CDY22132	Canola	mitochondrion	17.57	1.62
CDX83528	Canola	plastid	16.22	1.53
CDY33122	Canola	plastid	16.22	1.53
CDY48069	Canola	plastid	16.22	1.52
TraesCS3B01G595900.1	Wheat	plastid	5.41	1.45
CDY04167	Canola	plastid	14.86	1.44
CDY06544	Canola	cytosol	1.35	0.87
TraesCS6D01G046900.1	Wheat	cytosol	1.35	0.52
VIT_00s2341g00010.t01	Wine grape	cytosol	0.0	0.0
HORVU7Hr1G049340.2	Barley	cytosol	0.0	0.0
CDY66279	Canola	mitochondrion	0.0	0.0
CDY50296	Canola	cytosol	0.0	0.0
CDY36776	Canola	cytosol	0.0	0.0
CDY11961	Canola	cytosol	0.0	0.0
CDY36772	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.120.790	MapMan:35.1	GO:A0A078EZJ3	EnsemblPlants:CDY06546	ProteinID:CDY06546	ProteinID:CDY06546.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00122666001	InterPro:HSP90_C
InterPro:Hsp90_fam	InterPro:IPR037196	PFAM:PF00183	PANTHER:PTHR11528	PANTHER:PTHR11528:SF50	SUPFAM:SSF110942
UniParc:UPI0004EEB32A	:	:	:	:	:

Description

BnaC02g12700D

Coordinates

chrLK031971:+:246911..247510

Molecular Weight (calculated)

8163.4 Da

IEP (calculated)

3.839

GRAVY (calculated)

-0.930

Length

74 amino acids

Sequence
(BLAST)

1: MAGYMSSKKT MEINPENAIM EELRKRAEAD KNDKSVKDLL GLSIDEDDAV EGDAEMPPLE DDADAEGSKM EEVD

Best Arabidopsis Sequence Match ( AT5G56000.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIHIIPD KTNNTLTIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALA AGADVSMIGQ FGVGFYSAYL VADKVVVTTK HNDDEQYVWE SQAGGSFTVT RDTSGEALGR GTKMILYLKE DQMEYIEERR LKDLVKKHSE
201: FISYPISLWI EKTIEKEISD DEEEEEKKDE EGKVEEIDEE KEKEEKKKKK IKEVTHEWDL VNKQKPIWMR KPEEINKEEY AAFYKSLSND WEEHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDTKKKPN NIKLYVRRVF IMDNCEDIIP DYLGFVKGIV DSEDLPLNIS RETLQQNKIL KVIRKNLVKK CLELFFEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRTKI AELLRYHSTK SGDELTSLKD YVTRMKEGQN EIFYITGESK KAVENSPFLE KLKKKGYEVL YMVDAIDEYA
501: IGQLKEFEGK KLVSATKEGL KLEETDDEKK KKEELKEKFE GLCKVIKDVL GDKVEKVIVS DRVVDSPCCL VTGEYGWTAN MERIMKAQAL KDSNTGGYMS
601: SKKTMEINPE NSIMDELRKR AEADKNDKSV KDLVLLLFET ALLTSGFSLD EPNTFGSRIH RMLKLGLSIE EDDAVEADAE MPPLEDDADA EGSKMEEVD

Arabidopsis Description

HSP90-4Hsp81.4 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.