Factsheet for Zm00001d024903_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004930_P001
Zm00001d011401_P001
Zm00001d044172_P002
Zm00001d044259_P001
Zm00001d046204_P001
Zm00001d050655_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	Zm00001d044259_P001	AT2G26150.1	19366428
AT5G52640.1	Zm00001d046204_P001	AT2G26150.1	19366428
AT5G52640.1	Zm00001d004930_P001	AT3G21640.1	12410806
AT5G52640.1	Zm00001d011401_P001	AT4G11260.1	18065690
AT5G52640.1	Zm00001d044172_P002	AT4G11260.1	18065690
AT5G52640.1	Zm00001d050655_P001	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11741	Sorghum	cytosol	96.64	96.37
TraesCS2A01G033700.1	Wheat	plastid	90.34	91.23
TraesCS2D01G033200.2	Wheat	golgi	90.34	90.59
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	88.52	90.41
Os04t0107900-02	Rice	cytosol	31.51	90.36
TraesCS2B01G047400.1	Wheat	cytosol	89.92	90.17
PGSC0003DMT400024594	Potato	cytosol	88.66	89.91
KRH38373	Soybean	nucleus	87.96	89.84
KRH08858	Soybean	nucleus	87.53	89.41
GSMUA_Achr8P19130_001	Banana	cytosol	72.83	89.35
VIT_16s0050g01150.t01	Wine grape	cytosol	87.96	89.2
AT5G52640.1	Thale cress	cytosol	87.39	89.14
VIT_02s0025g00280.t01	Wine grape	cytosol	87.68	89.05
PGSC0003DMT400074377	Potato	cytosol	50.98	89.0
CDY27839	Canola	cytosol	87.53	88.65
Solyc06g036290.2.1	Tomato	nucleus, plastid	75.35	88.63
Zm00001d006008_P001	Maize	plastid	84.59	86.53
Zm00001d031332_P007	Maize	cytosol	81.65	86.37
Zm00001d052855_P001	Maize	plasma membrane	83.89	85.69
PGSC0003DMT400074374	Potato	cytosol	36.55	85.29
Bra003119.1-P	Field mustard	plastid	69.19	81.25
Zm00001d020898_P002	Maize	cytosol	79.97	80.54
CDY50297	Canola	plastid	71.15	79.87
PGSC0003DMT400014217	Potato	cytosol	31.23	77.7
KRH04730	Soybean	cytosol	37.82	75.0
VIT_13s0106g00410.t01	Wine grape	cytosol	9.52	55.74
Zm00001d036401_P001	Maize	plasma membrane	49.86	44.28
Zm00001d014792_P003	Maize	plasma membrane	49.58	43.81
Zm00001d031274_P001	Maize	cytosol	8.26	42.75
Zm00001d052809_P002	Maize	plastid	44.54	40.1
Zm00001d020827_P001	Maize	mitochondrion	44.26	39.65
Zm00001d009931_P001	Maize	cytosol	9.52	37.78
Zm00001d035285_P003	Maize	extracellular	41.88	37.19
Zm00001d041719_P001	Maize	mitochondrion	42.02	36.9
VIT_05s0094g00110.t01	Wine grape	nucleus, peroxisome, plastid	11.2	29.85

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:100196928	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	ProteinID:AQK42298.1	EMBL:BT063272	EMBL:BT063955	UniProt:C0P4Q3	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS
InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196	HAMAP:MF_00505	PFAM:PF00183
PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74
InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211	SUPFAM:SSF55874	UniParc:UPI0001948E4C
EnsemblPlantsGene:Zm00001d024903	EnsemblPlants:Zm00001d024903_P001	EnsemblPlants:Zm00001d024903_T001	SEG:seg	:	:

Description

heat shock protein, 90 kDa heat shock protein 90 kDa

Coordinates

chr10:+:93908317..93911235

Molecular Weight (calculated)

81807.0 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.601

Length

714 amino acids

Sequence
(BLAST)

001: MASADVHMAG GAETETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNAS DALDKIRFES LTDKSKLDAQ PELFIRLVPD KASKTLSIID SGVGMTKSDL
101: VNNLGTIARS GTKEFMEALA AGATDVSMIG QFGVGFYSAY LVADRVMVTT KHNDDEQYVW ESQAGGSFTV THDTTGERLG RGTKITLFLK DDQLEYLEER
201: RLKDLVKKHS EFISYPIYLW TEKTTEKEIS DDEEEDNKKE EEGDVEEVDD EDKDAKDKSK KKKKVKEVSH EWVQINKQKP IWLRKPEEIT REEYASFYKS
301: LTNDWEDHLA VKHFSVEGQL EFKAILFVPR RAPFDLFDTR KKLNNIKLYV RRVFIMDNCE ELIPEWLGFV KGVVDSDDLP LNISRETLQQ NKILKVIRKN
401: LVKKCIEMFF EIAENKDDYA KFYDAFSKNI KLGIHEDSQN RAKLADLLRY HSTKSGDETT SLKDYVTRMK EGQKDIYYIT GESRKAVENS PFLERLKKKG
501: YEVLFMVDAI DEYAVGQLKE YDGKKLVSAT KEGLKLDDED DEEAKKRREE RKKRFEELCK VIKDILGDRV EKVVVSDRIV DSPCCLVTGE YGWTANMERI
601: MKAQALRDSS MSAYMSSKKT MEINPDNGIM EELRKRAEAD RNDKSVKDLV LLLFETALLT SGFSLDDPNT FAARIHRMLK LGLNIDEDAA ADEDADMPAL
701: DEGAAEESKM EEVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.