Factsheet for Zm00001d011401_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007938_P003
Zm00001d010529_P001
Zm00001d012420_P001
Zm00001d024903_P001
Zm00001d028630_P005
Zm00001d042922_P002
Zm00001d048687_P002
Zm00001d050655_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	Zm00001d010529_P001	AT3G12580.1	18065690
AT4G11260.1	Zm00001d012420_P001	AT3G12580.1	18065690
AT4G11260.1	Zm00001d028630_P005	AT3G12580.1	18065690
AT4G11260.1	Zm00001d042922_P002	AT3G12580.1	18065690
AT4G11260.1	Zm00001d007938_P003	AT4G37460.1	21798944
AT4G11260.1	Zm00001d048687_P002	AT5G02490.1	18065690
AT4G11260.1	Zm00001d048687_P002	AT5G02500.1	18065690
AT4G11260.1	Zm00001d050655_P001	AT5G51700.1	11847307
AT4G11260.1	Zm00001d050655_P001	AT5G51700.1	18065690
AT4G11260.1	Zm00001d024903_P001	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01101	Sorghum	cytosol	94.74	93.96
Zm00001d044172_P002	Maize	extracellular	92.8	92.8
Os01t0624500-01	Rice	cytosol, nucleus	28.53	87.29
HORVU3Hr1G055920.7	Barley	cytosol	81.72	79.09
TraesCS3B01G255300.1	Wheat	cytosol	76.73	73.47
TraesCS3D01G227500.3	Wheat	golgi	84.21	71.87
GSMUA_Achr7P10850_001	Banana	cytosol	67.59	66.48
VIT_16s0050g01510.t01	Wine grape	cytosol	65.37	65.37
Solyc03g007670.2.1	Tomato	cytosol, extracellular	66.2	64.59
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	65.65	64.05
Bra019295.1-P	Field mustard	cytosol	59.56	62.68
CDY10946	Canola	cytosol	59.56	62.5
CDX94203	Canola	cytosol	59.28	62.21
GSMUA_Achr4P15560_001	Banana	cytosol	63.16	61.79
KRH35228	Soybean	cytosol	60.94	61.62
GSMUA_Achr7P14290_001	Banana	cytosol	63.16	61.62
AT4G23570.3	Thale cress	cytosol	59.83	61.54
CDY43481	Canola	cytosol	11.91	61.43
CDY28656	Canola	cytosol	11.91	61.43
CDY10892	Canola	endoplasmic reticulum, golgi	32.13	61.38
KRH08815	Soybean	nucleus	60.66	61.0
KRH38332	Soybean	cytosol, nucleus	60.66	61.0
PGSC0003DMT400074364	Potato	cytosol	62.6	60.92
Bra000741.1-P	Field mustard	cytosol	60.39	60.89
CDY05137	Canola	cytosol	60.39	60.72
Solyc06g036410.1.1	Tomato	cytosol	11.08	60.61
Bra035239.1-P	Field mustard	cytosol	59.56	60.56
CDX90794	Canola	cytosol	60.11	60.45
CDX86798	Canola	cytosol	59.56	60.22
Bra013710.1-P	Field mustard	cytosol	53.19	59.63
CDY13243	Canola	cytosol	58.73	59.55
CDY44117	Canola	cytosol	58.73	59.38
KRH77588	Soybean	cytosol	59.0	59.0
AT4G11260.1	Thale cress	cytosol	58.45	58.94
Solyc06g036420.1.1	Tomato	cytosol	47.92	58.45
CDY10894	Canola	cytosol	57.06	58.03
KRH27885	Soybean	cytosol	57.89	55.88
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	32.69	53.64
Bra019498.1-P	Field mustard	cytosol, plastid	29.36	47.96
VIT_02s0025g00450.t01	Wine grape	cytosol	42.66	45.56
KRG94038	Soybean	cytosol, mitochondrion, nucleus	8.86	43.84
CDY63435	Canola	cytosol, mitochondrion, nucleus	33.52	41.16
CDY71639	Canola	cytosol, plastid	11.91	36.13
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.5	29.25

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103636097	MapMan:19.1.6.3	Gene3D:2.60.40.790	ProteinID:AQK96783.1	InterPro:CS_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052
InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K7VJS8
PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293
PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000220AC6A
EnsemblPlantsGene:Zm00001d011401	EnsemblPlants:Zm00001d011401_P001	EnsemblPlants:Zm00001d011401_T001	SEG:seg	:	:

Description

Protein SGT1 homolog A

Coordinates

chr8:+:149523666..149538687

Molecular Weight (calculated)

40086.9 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.635

Length

361 amino acids

Sequence
(BLAST)

001: MAASDLESKA KEAFVDDDFE LAAELYTQAI DAGPATADLY ADRAQAHIKL GNYTEAVADA NKAIGLDPTM HKAYYRKGAA CIKLEEYQTA KAALELGSSY
101: APGDSRFTRL LKECDECIAE ESSQAPAKNV EAPVAATVED KEDVANMDNT PPVVEPPSKP KYRHDYYNSA TEVVLTIYAK GVPADSVVID FGDQMLSVSI
201: EVPGEEPYHF QPRLFSKIIP EKCKYQVLST KVEIRLAKAE QVTWTTLDYS GRPKAIPQKI STPAETAPRP SYPSSKSKKD WDKLEAEVKK EEKEEKLEGD
301: AALNKFFRDI YKDADEDMRR AMDKSFRESN GTVLSTNWKD VGSKTVEASP PDGMELKKWE I

Best Arabidopsis Sequence Match ( AT4G23570.1 )
(BLAST)

001: MAKELADKAK EAFVDDDFDV AVDLYSKAID LDPNCAEFFA DRAQAYIKLE SFTEAVADAN KAIELDPSLT KAYLRKGTAC MKLEEYRTAK TALEKGASIT
101: PSESKFKKLI DECNFLITEE EKDLVQPVPS TLPSSVTAPP VSELDVTPTA KYRHEYYQKP EEVVVTVFAK GIPKQNVNID FGEQILSVVI EVPGEDAYYL
201: QPRLFGKIIP DKCKYEVLST KIEICLAKAD IITWASLEHG KGPAVLPKPN VSSEVSQRPA YPSSKKVKDW DKLEAEVKKQ EKDEKLEGDA ALNKFFREIY
301: QNADEDMRRA MSKSFVESNG TVLSTNWQEV GTKTIESTPP DGMELKKWEI

Arabidopsis Description

SGT1Aphosphatase-related [Source:TAIR;Acc:AT4G23570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.