CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91395
KRH01631
KRH04486
KRH08858
KRH28408
KRH35422
KRH38373
KRH58036
KRH70484
KRH77069

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	KRH01631	AT3G12580.1	18065690
AT4G11260.1	KRH70484	AT3G12580.1	18065690
AT4G11260.1	KRH04486	AT4G37460.1	21798944
AT4G11260.1	KRH28408	AT4G37460.1	21798944
AT4G11260.1	KRH58036	AT4G37460.1	21798944
AT4G11260.1	KRH77069	AT4G37460.1	21798944
AT4G11260.1	KRG91395	AT5G51700.1	11847307
AT4G11260.1	KRH35422	AT5G51700.1	11847307
AT4G11260.1	KRG91395	AT5G51700.1	18065690
AT4G11260.1	KRH35422	AT5G51700.1	18065690
AT4G11260.1	KRH08858	AT5G52640.1	18065690
AT4G11260.1	KRH38373	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27885	Soybean	cytosol	92.8	89.57
Os01t0624500-01	Rice	cytosol, nucleus	23.82	72.88
Bra019295.1-P	Field mustard	cytosol	61.77	65.01
CDY10946	Canola	cytosol	61.77	64.83
KRH08815	Soybean	nucleus	64.27	64.62
KRH38332	Soybean	cytosol, nucleus	63.99	64.35
CDX94203	Canola	cytosol	60.94	63.95
KRH35228	Soybean	cytosol	62.6	63.31
AT4G23570.3	Thale cress	cytosol	60.94	62.68
CDX90794	Canola	cytosol	62.33	62.67
CDY13243	Canola	cytosol	61.5	62.36
Bra035239.1-P	Field mustard	cytosol	60.94	61.97
CDX86798	Canola	cytosol	60.94	61.62
CDY05137	Canola	cytosol	61.22	61.56
Bra000741.1-P	Field mustard	cytosol	60.94	61.45
CDY28656	Canola	cytosol	11.91	61.43
CDY43481	Canola	cytosol	11.91	61.43
AT4G11260.1	Thale cress	cytosol	60.66	61.17
Zm00001d044172_P002	Maize	extracellular	60.94	60.94
Bra013710.1-P	Field mustard	cytosol	54.02	60.56
GSMUA_Achr7P10850_001	Banana	cytosol	61.5	60.49
CDY10892	Canola	endoplasmic reticulum, golgi	31.58	60.32
CDY10894	Canola	cytosol	58.73	59.72
EES01101	Sorghum	cytosol	60.11	59.62
GSMUA_Achr7P14290_001	Banana	cytosol	60.94	59.46
CDY44117	Canola	cytosol	58.45	59.1
Zm00001d011401_P001	Maize	extracellular	59.0	59.0
GSMUA_Achr4P15560_001	Banana	cytosol	59.83	58.54
HORVU3Hr1G055920.7	Barley	cytosol	60.11	58.18
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	34.63	56.82
TraesCS3B01G255300.1	Wheat	cytosol	54.85	52.52
TraesCS3D01G227500.3	Wheat	golgi	59.56	50.83
VIT_02s0025g00450.t01	Wine grape	cytosol	46.81	50.0
Bra019498.1-P	Field mustard	cytosol, plastid	29.09	47.51
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.42	46.58
CDY63435	Canola	cytosol, mitochondrion, nucleus	34.35	42.18
CDY71639	Canola	cytosol, plastid	12.74	38.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	EMBL:ACUP02000680	InterPro:CS_dom	EnsemblPlantsGene:GLYMA_01G222400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HSP20-like_chaperone	UniProt:I1JA98	InterPro:IPR007052
InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH77588
ProteinID:KRH77588	ProteinID:KRH77588.1	PFAM:PF04969	PFAM:PF05002	PFscan:PS50005	PFscan:PS50293
PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00023BE439
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55125219..55129369

Molecular Weight (calculated)

40603.8 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.620

Length

361 amino acids

Sequence
(BLAST)

001: MATALEKKAK EAFFDDEFGL AVDLYSEAIR LDPNDANLFA DRAQAHIKLN AFTEAVSDAN KSIQLNPSLP KAYLRKATAC IKLQEYHTAK VALQNGAAFA
101: QDDSRFANLI QQCDRCIAEE SSGLTSTLSS HLSNRNNGMT KEEAEGDSLL SQKNEATLNR PKYRHEYYQK PEEVVVTIFA KGISAKDVVV DFGEQILSVT
201: IDVPGQDAYH YQPRLFGKII PNNCRVEVLS TKIEIRLAKA EAINWTSLEY GKNTLPPIIN RPIVQSERAS YPSPKPRTKD WDKLEAQVKK EEKEEKLDGD
301: AALNKLFRDI YQNADEDMRR AMSKSFLESN GTVLSTDWKE VGSKKVEGSP PEGMELKKWE Y

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.