Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10892 | Canola | endoplasmic reticulum, golgi | 73.18 | 85.19 |
| CDY28656 | Canola | cytosol | 22.27 | 70.0 |
| CDY43481 | Canola | cytosol | 22.27 | 70.0 |
| Os01t0624500-01 | Rice | cytosol, nucleus | 34.09 | 63.56 |
| KRG94038 | Soybean | cytosol, mitochondrion, nucleus | 16.36 | 49.32 |
| CDY10946 | Canola | cytosol | 70.45 | 45.06 |
| CDY10894 | Canola | cytosol | 72.27 | 44.79 |
| CDY44117 | Canola | cytosol | 71.36 | 43.98 |
| CDX94203 | Canola | cytosol | 68.64 | 43.9 |
| AT4G23570.3 | Thale cress | cytosol | 67.73 | 42.45 |
| CDY13243 | Canola | cytosol | 63.18 | 39.04 |
| CDX90794 | Canola | cytosol | 63.64 | 39.0 |
| CDY05137 | Canola | cytosol | 63.64 | 39.0 |
| CDY71639 | Canola | cytosol, plastid | 20.91 | 38.66 |
| CDX86798 | Canola | cytosol | 62.27 | 38.38 |
| Solyc06g036420.1.1 | Tomato | cytosol | 50.91 | 37.84 |
| KRH77588 | Soybean | cytosol | 56.82 | 34.63 |
| VIT_16s0050g01510.t01 | Wine grape | cytosol | 56.36 | 34.35 |
| Solyc03g007670.2.1 | Tomato | cytosol, extracellular | 57.27 | 34.05 |
| KRH08815 | Soybean | nucleus | 55.45 | 33.98 |
| PGSC0003DMT400053839 | Potato | cytosol, mitochondrion | 55.91 | 33.24 |
| KRH27885 | Soybean | cytosol | 56.36 | 33.16 |
| KRH38332 | Soybean | cytosol, nucleus | 53.64 | 32.87 |
| Zm00001d011401_P001 | Maize | extracellular | 53.64 | 32.69 |
| HORVU3Hr1G055920.7 | Barley | cytosol | 55.0 | 32.44 |
| Zm00001d044172_P002 | Maize | extracellular | 53.18 | 32.41 |
| EES01101 | Sorghum | cytosol | 52.73 | 31.87 |
| GSMUA_Achr7P10850_001 | Banana | cytosol | 52.73 | 31.61 |
| TraesCS3B01G255300.1 | Wheat | cytosol | 53.64 | 31.3 |
| KRH35228 | Soybean | cytosol | 50.45 | 31.09 |
| GSMUA_Achr7P14290_001 | Banana | cytosol | 51.36 | 30.54 |
| PGSC0003DMT400074364 | Potato | cytosol | 51.36 | 30.46 |
| GSMUA_Achr4P15560_001 | Banana | cytosol | 49.09 | 29.27 |
| CDY63435 | Canola | cytosol, mitochondrion, nucleus | 37.73 | 28.23 |
| TraesCS3D01G227500.3 | Wheat | golgi | 54.09 | 28.13 |
| VIT_02s0025g00450.t01 | Wine grape | cytosol | 32.27 | 21.01 |
| VIT_12s0035g01560.t01 | Wine grape | cytosol, plasma membrane, vacuole | 23.18 | 20.16 |
| Solyc06g036410.1.1 | Tomato | cytosol | 2.73 | 9.09 |
Protein Annotations
| MapMan:19.1.6.3 | Gene3D:2.60.40.790 | GO:A0A078I4R0 | UniProt:A0A078I4R0 | EnsemblPlants:CDY44118 | ProteinID:CDY44118 |
| ProteinID:CDY44118.1 | InterPro:CS_dom | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00079562001 |
| InterPro:HSP20-like_chaperone | InterPro:IPR007052 | InterPro:IPR007699 | InterPro:IPR008978 | PFAM:PF04969 | PFAM:PF05002 |
| PFscan:PS51048 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF496 | InterPro:SGS_dom | SUPFAM:SSF49764 | TMHMM:TMhelix |
| UniParc:UPI0004EE11F5 | : | : | : | : | : |
Description
BnaA01g13260DBnaA01g13260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4R0]
Coordinates
chrLK032579:+:191186..192515
Molecular Weight (calculated)
24673.0 Da
IEP (calculated)
9.371
GRAVY (calculated)
-0.243
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTSSSCSEI RTAYFSNLQC LALPISSCSE SSLTVVLILV IAIKLQILRR ISNQLSVVID VPGEDEAYHL QPRLFGKIVP AKCRYEVLST KVEIRLAKAE
101: IITRASLEHG KGLTVFPKPN VLSKVSKRPA YPSSKKVKDW EKLEAEVKKQ EKGEKLEGDA ALNKSLREIY LNADEDMRRA MSKSFVESNG TVLSIDWKEV
201: GAKTIESTRP DGMELKKWEI
101: IITRASLEHG KGLTVFPKPN VLSKVSKRPA YPSSKKVKDW EKLEAEVKKQ EKGEKLEGDA ALNKSLREIY LNADEDMRRA MSKSFVESNG TVLSIDWKEV
201: GAKTIESTRP DGMELKKWEI
001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
Arabidopsis Description
SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.