Factsheet for GSMUA_Achr7P10850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P01500_001
GSMUA_Achr8P19130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	GSMUA_Achr5P01500_001	AT4G37460.1	21798944
AT4G11260.1	GSMUA_AchrUn_...	AT5G51700.1	11847307
AT4G11260.1	GSMUA_AchrUn_...	AT5G51700.1	18065690
AT4G11260.1	GSMUA_Achr8P19130_001	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0624500-01	Rice	cytosol, nucleus	25.61	79.66
GSMUA_Achr7P14290_001	Banana	cytosol	74.93	74.32
Zm00001d044172_P002	Maize	extracellular	68.12	69.25
EES01101	Sorghum	cytosol	68.39	68.96
VIT_16s0050g01510.t01	Wine grape	cytosol	67.03	68.14
Zm00001d011401_P001	Maize	extracellular	66.48	67.59
HORVU3Hr1G055920.7	Barley	cytosol	68.66	67.56
GSMUA_Achr4P15560_001	Banana	cytosol	67.57	67.21
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	66.76	66.22
KRH08815	Soybean	nucleus	64.03	65.46
Solyc03g007670.2.1	Tomato	cytosol, extracellular	65.4	64.86
CDX94203	Canola	cytosol	60.76	64.83
Bra019295.1-P	Field mustard	cytosol	60.49	64.72
CDY10946	Canola	cytosol	60.49	64.53
KRH38332	Soybean	cytosol, nucleus	62.94	64.35
KRH35228	Soybean	cytosol	61.85	63.59
TraesCS3B01G255300.1	Wheat	cytosol	64.85	63.13
CDX90794	Canola	cytosol	61.58	62.95
Bra035239.1-P	Field mustard	cytosol	60.22	62.25
Solyc06g036410.1.1	Tomato	cytosol	11.17	62.12
CDY05137	Canola	cytosol	60.76	62.12
CDY13243	Canola	cytosol	60.22	62.08
CDX86798	Canola	cytosol	60.22	61.9
Bra000741.1-P	Field mustard	cytosol	60.22	61.73
KRH77588	Soybean	cytosol	60.49	61.5
AT4G11260.1	Thale cress	cytosol	59.95	61.45
AT4G23570.3	Thale cress	cytosol	58.31	60.97
TraesCS3D01G227500.3	Wheat	golgi	69.48	60.28
CDY10894	Canola	cytosol	58.31	60.28
Bra013710.1-P	Field mustard	cytosol	52.86	60.25
CDY44117	Canola	cytosol	58.58	60.22
PGSC0003DMT400074364	Potato	cytosol	60.22	59.57
KRH27885	Soybean	cytosol	60.49	59.36
CDY10892	Canola	endoplasmic reticulum, golgi	30.25	58.73
Solyc06g036420.1.1	Tomato	cytosol	46.32	57.43
CDY43481	Canola	cytosol	10.9	57.14
CDY28656	Canola	cytosol	10.9	57.14
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	31.61	52.73
VIT_02s0025g00450.t01	Wine grape	cytosol	45.23	49.11
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.26	46.58
Bra019498.1-P	Field mustard	cytosol, plastid	26.7	44.34
CDY63435	Canola	cytosol, mitochondrion, nucleus	33.52	41.84
CDY71639	Canola	cytosol, plastid	10.9	33.61
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.16	29.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	InterPro:CS_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G10850_001	EnsemblPlants:GSMUA_Achr7P10850_001	EnsemblPlants:GSMUA_Achr7T10850_001	InterPro:HSP20-like_chaperone	InterPro:IPR007052
InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M0TGH3
PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PFscan:PS51048
PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002959EF5	SEG:seg

Description

Putative Suppressor of G2 allele of SKP1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr7G10850_001]

Coordinates

chr7:-:8690035..8702788

Molecular Weight (calculated)

41143.3 Da

IEP (calculated)

4.841

GRAVY (calculated)

-0.602

Length

367 amino acids

Sequence
(BLAST)

001: MATDLEMRAK EAFVDDNFDL AVDLYTQALD VDPKNADLYA DRAQANIKLE SFTEAVADAN KAIELDPSMT KAYLRKGTAC IKLEEYQTAK AALEAGVLLA
101: PGDSRFTKLI KECDERIAEE TVSLSKKVMP NAPPTTMSHS SDTTIEEVNS SHSTHGLPNQ TKETPNKPKF RHDYYNTPTE VVLTIFAKGI PAENVTVEFG
201: EQTLSVTIDS LGEEYHFQRR LFAKIVPANC RYQVLSTKVE IRLLKAETIT WTSLEYSGKA VPQKINTFSA TMQQRPSYPS SKSKVDWDKL EAEVKKEEKD
301: EKLDGDAALN RFFQDIYRDA DEDTRRAMSK SFVESNGTVL STNWGEVGSK KVEGSAPDGM EIKKWEY

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.