Factsheet for GSMUA_Achr5P01500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28408	Soybean	cytosol	28.52	12.12
Solyc02g092780.1.1	Tomato	nucleus	35.74	9.86
KRH77069	Soybean	cytosol	34.36	9.55
VIT_07s0129g00540.t01	Wine grape	cytosol	34.71	9.46
CDX75658	Canola	cytosol	32.99	9.41
KRH04486	Soybean	cytosol	33.68	9.4
AT4G37460.1	Thale cress	cytosol	33.68	9.32
CDX69309	Canola	cytosol	32.65	9.29
Bra011768.1-P	Field mustard	cytosol	32.99	9.28
KRH58036	Soybean	cytosol	32.3	8.95
GSMUA_Achr5P01510_001	Banana	cytosol	2.06	6.45
CDX72631	Canola	cytosol, endoplasmic reticulum	13.06	6.39
CDY06838	Canola	cytosol	1.72	6.02
GSMUA_Achr5P01520_001	Banana	cytosol	3.78	4.98
CDY06839	Canola	cytosol	1.37	4.17
CDY29552	Canola	plasma membrane	3.09	4.0
Bra017825.1-P	Field mustard	plasma membrane	3.09	4.0
CDX72630	Canola	mitochondrion	0.34	0.93
GSMUA_Achr5P01530_001	Banana	plasma membrane	1.37	0.84

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01500_001	EnsemblPlants:GSMUA_Achr5T01500_001	EnsemblPlantsGene:GSMUA_Achr5G01500_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR44749	PFscan:PS50293	SEG:seg	SMART:SM00028	SUPFAM:SSF48452
UniParc:UPI00029483AF	UniProt:M0SUS9	MapMan:35.1	:	:	:

Description

Putative tetratricopeptide repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G01500_001]

Coordinates

chr5:+:874774..879343

Molecular Weight (calculated)

31869.4 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.476

Length

291 amino acids

Sequence
(BLAST)

001: MAPAANERLE LARLCSGRNW SKAIRVLDSI VAKSSLVQDI CNRAFCYSRL ELHKHVIKDC DKALQLNPNA LQAYILKGNA LSALGRKEEA LHVWEEGYQN
101: AVCDSTDLKQ LLELEELLAG TRESPSFAGE DHSMDASSCE TKVVVSEDHI MDSSSTNVST TETEAIICED HGSSGVTKVV VSEDHVTDSR IKNSSTTNAE
201: HTTNSSGVTP SDKESVNGHK LENTHEICSK PVDSTDIFSM YNDTTKLGRK VVVTGIQKTK SISLDLRLSR GISQVGLVDT KKRNHVQRKG N

Best Arabidopsis Sequence Match ( AT4G37460.2 )
(BLAST)

001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKP

Arabidopsis Description

SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.