Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
26371478
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0129g00540.t01 | Wine grape | cytosol | 70.14 | 69.29 |
| KRH04486 | Soybean | cytosol | 68.15 | 69.0 |
| KRH77069 | Soybean | cytosol | 68.34 | 68.86 |
| KRH58036 | Soybean | cytosol | 67.2 | 67.52 |
| CDX72630 | Canola | mitochondrion | 6.64 | 65.42 |
| CDX75658 | Canola | cytosol | 61.61 | 63.73 |
| Bra011768.1-P | Field mustard | cytosol | 61.8 | 63.06 |
| CDX69309 | Canola | cytosol | 60.76 | 62.66 |
| AT4G37460.1 | Thale cress | cytosol | 61.71 | 61.88 |
| CDY29552 | Canola | plasma membrane | 12.89 | 60.44 |
| Bra017825.1-P | Field mustard | plasma membrane | 12.89 | 60.44 |
| TraesCS2D01G260800.1 | Wheat | cytosol | 56.87 | 59.52 |
| TraesCS2B01G279000.1 | Wheat | cytosol | 56.87 | 59.52 |
| TraesCS2A01G263200.1 | Wheat | cytosol, mitochondrion | 56.59 | 59.23 |
| Os07t0113700-01 | Rice | cytosol | 56.3 | 58.75 |
| KXG34268 | Sorghum | cytosol, mitochondrion | 56.21 | 58.54 |
| KRH28408 | Soybean | cytosol | 37.54 | 57.81 |
| HORVU2Hr1G063340.8 | Barley | plastid | 56.97 | 57.57 |
| Zm00001d007938_P003 | Maize | cytosol, mitochondrion | 55.45 | 55.5 |
| CDY06838 | Canola | cytosol | 4.08 | 51.81 |
| CDX72631 | Canola | cytosol, endoplasmic reticulum | 26.92 | 47.73 |
| GSMUA_Achr5P01500_001 | Banana | cytosol | 9.86 | 35.74 |
| CDY06839 | Canola | cytosol | 3.22 | 35.42 |
| TraesCS2B01G273000.1 | Wheat | plastid | 3.79 | 29.63 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:K4BD74 |
| PFAM:PF00515 | PFAM:PF13181 | PFAM:PF13432 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR44749 |
| SMART:SM00028 | SUPFAM:SSF48452 | EnsemblPlantsGene:Solyc02g092780.1 | EnsemblPlants:Solyc02g092780.1.1 | TMHMM:TMhelix | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI0002768138 | SEG:seg | : |
Description
No Description!
Coordinates
chr2:+:53734306..53750650
Molecular Weight (calculated)
118462.0 Da
IEP (calculated)
7.648
GRAVY (calculated)
-0.454
Length
1055 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASKVTDRIE LAKLCSSKEW SKAIRILDSL LAQTCVIQDI CNRAFCYSQL ELHKHVIKDC DKALQLDPKL LQAYIFKGRA LSALGKKEEA LLVWEQGYEH
0101: AVHQSADLKQ LLELEELLKI AKQNTAVGSN NHSVQSSGPE SNTGPPLSTK SGETCDISKA SDRELKTCSS GMLESSEKSK NSSVLQNSSS NNSKKHKKIE
0201: SESKELHERQ ANKTNNNCKK LGYPSLVCSE LSDISEDSRK SSAVTSESSE QSEPNELQEI LSQLNNKCDV RVELSDEGKR NKKFCVTRVN KTKSINVDFR
0301: LSRGIAQVNE GKYSNAVSIF DQILEQDPTY PEALIGRGTA LAFQRELDAA ISDFTKAIQS NPSAGEAWKR RGQARAALGE SVEAITDLTK ALEFEPDSAD
0401: ILHERGIVNF KFKDFKGAVE DLSTCVKSDK DNKSAYTYLG LALYSLGEYR KAEEAHKKAI QIERNFLEAW AHLAQFYQDL ANSEKALECL HQILQIDGRY
0501: AKAYHLRGLL LHGMGEHRNA IKDLSMGLAI DSANIECLYL RASCYHAIGL YKEAVKDYDA ALDLELDSME KFVLQCLAFY QKEIALYTAS KMNSEFSWFD
0601: IDGDIDPLFK EYWCKRLHPK NVCEKVYRQP PLKESLKKGK QRKQEFTFTK QKTALLQAAD SIGRNIQYHC PGFLHNRRQH RMAGLAAIEI AQKVSKAWRA
0701: LQAEWRNSTK GTGKSGKRLR RREKLNSISL NRGGAGCSTS SSSDTSTSYS LIDDRSTGRS MMSWNHLYSL AVKWRQISEP CDPVVWINKL SEEFNTGFGS
0801: HTPLVLGQAK VVRYHPNFQR TLTVAKAVIK ENKSVCNKED KIIDLSEQQK LQEIMAAESS SDLYRVVGQD FWLATWCNST ALEGKRLEGT RITVVKMGEI
0901: GYDFAIRTPC TPARWDDFDV EMTSAWEALC AAYCGDNYGS TDFDVLENVR DAILRMTYYW YNFMPLSRGT AVVGFIVLLG LLLAANMEFT GSIPKGLQVD
1001: WEAILEFDSS SFVDSVKKWL YPSLKVSTSW KSYPDVTSTF ETTGSVVAAL STYSD
0101: AVHQSADLKQ LLELEELLKI AKQNTAVGSN NHSVQSSGPE SNTGPPLSTK SGETCDISKA SDRELKTCSS GMLESSEKSK NSSVLQNSSS NNSKKHKKIE
0201: SESKELHERQ ANKTNNNCKK LGYPSLVCSE LSDISEDSRK SSAVTSESSE QSEPNELQEI LSQLNNKCDV RVELSDEGKR NKKFCVTRVN KTKSINVDFR
0301: LSRGIAQVNE GKYSNAVSIF DQILEQDPTY PEALIGRGTA LAFQRELDAA ISDFTKAIQS NPSAGEAWKR RGQARAALGE SVEAITDLTK ALEFEPDSAD
0401: ILHERGIVNF KFKDFKGAVE DLSTCVKSDK DNKSAYTYLG LALYSLGEYR KAEEAHKKAI QIERNFLEAW AHLAQFYQDL ANSEKALECL HQILQIDGRY
0501: AKAYHLRGLL LHGMGEHRNA IKDLSMGLAI DSANIECLYL RASCYHAIGL YKEAVKDYDA ALDLELDSME KFVLQCLAFY QKEIALYTAS KMNSEFSWFD
0601: IDGDIDPLFK EYWCKRLHPK NVCEKVYRQP PLKESLKKGK QRKQEFTFTK QKTALLQAAD SIGRNIQYHC PGFLHNRRQH RMAGLAAIEI AQKVSKAWRA
0701: LQAEWRNSTK GTGKSGKRLR RREKLNSISL NRGGAGCSTS SSSDTSTSYS LIDDRSTGRS MMSWNHLYSL AVKWRQISEP CDPVVWINKL SEEFNTGFGS
0801: HTPLVLGQAK VVRYHPNFQR TLTVAKAVIK ENKSVCNKED KIIDLSEQQK LQEIMAAESS SDLYRVVGQD FWLATWCNST ALEGKRLEGT RITVVKMGEI
0901: GYDFAIRTPC TPARWDDFDV EMTSAWEALC AAYCGDNYGS TDFDVLENVR DAILRMTYYW YNFMPLSRGT AVVGFIVLLG LLLAANMEFT GSIPKGLQVD
1001: WEAILEFDSS SFVDSVKKWL YPSLKVSTSW KSYPDVTSTF ETTGSVVAAL STYSD
0001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
Arabidopsis Description
SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.