Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75658 | Canola | cytosol | 63.03 | 36.76 |
| CDX69309 | Canola | cytosol | 62.52 | 36.36 |
| CDY06839 | Canola | cytosol | 4.87 | 30.21 |
| KRH77069 | Soybean | cytosol | 49.41 | 28.08 |
| VIT_07s0129g00540.t01 | Wine grape | cytosol | 49.75 | 27.72 |
| KRH58036 | Soybean | cytosol | 48.4 | 27.43 |
| KRH04486 | Soybean | cytosol | 47.73 | 27.26 |
| Solyc02g092780.1.1 | Tomato | nucleus | 47.73 | 26.92 |
| KXG34268 | Sorghum | cytosol, mitochondrion | 41.85 | 24.58 |
| TraesCS2B01G279000.1 | Wheat | cytosol | 41.18 | 24.31 |
| TraesCS2D01G260800.1 | Wheat | cytosol | 41.01 | 24.21 |
| TraesCS2A01G263200.1 | Wheat | cytosol, mitochondrion | 40.84 | 24.11 |
| Os07t0113700-01 | Rice | cytosol | 40.5 | 23.84 |
| HORVU2Hr1G063340.8 | Barley | plastid | 41.01 | 23.37 |
| Zm00001d007938_P003 | Maize | cytosol, mitochondrion | 41.18 | 23.24 |
| TraesCS2B01G273000.1 | Wheat | plastid | 4.87 | 21.48 |
| CDY29552 | Canola | plasma membrane | 7.73 | 20.44 |
| KRH28408 | Soybean | cytosol | 22.69 | 19.71 |
| CDY06838 | Canola | cytosol | 1.85 | 13.25 |
| GSMUA_Achr5P01500_001 | Banana | cytosol | 6.39 | 13.06 |
| CDX72630 | Canola | mitochondrion | 0.5 | 2.8 |
Protein Annotations
| EnsemblPlants:CDX72631 | EnsemblPlantsGene:GSBRNA2T00100186001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| PANTHER:PTHR44749 | PFAM:PF13181 | PFscan:PS50005 | PFscan:PS50293 | ProteinID:CDX72631 | ProteinID:CDX72631.1 |
| SEG:seg | SMART:SM00028 | SUPFAM:SSF48452 | UniParc:UPI0004EDEE43 | MapMan:35.1 | : |
Description
BnaC07g46530D
Coordinates
chrLK031796:-:2285489..2289820
Molecular Weight (calculated)
66382.7 Da
IEP (calculated)
7.524
GRAVY (calculated)
-0.346
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMLLVLVFT PSFPRPRRED KTRAIETLWW LAKMATATSQ GVLDSLLAKQ CSILDIWLIK DCDKALQLIY SKELAAMENT HELSNDASKA SKHSGGTWGS
101: GNGSAYKEKE NVKSSSQING SYESCNGSDL HDNLSESSVR LGDLSIIGDK LSSKPGSITK LSLKDEARCG VSGRTKINKK CTIARISETH SISVDFRISR
201: GIAQVNEGHY MKAISIFDKA LIGRGTAYAF QRELENAITD FTKAIESNPA ACEAWKRRGQ ARAALGEFAE VSGSKSSLLL EEAHSKSIQL DSNYLEAWLH
301: LAQHYQELAD HHKAMECTEH ALQVNYRMLH YPVLTRVWKA YHLRGLAFHG LGEHRKAIQE LSIGLSIENS IECLYLRGSC YHAVGEYRDA VKDYDATVDV
401: ELDAVEKFVL QCLAFYQVPR DVFFVDNPEK EIALYTASKA SSEFSCFDID GDLDQMFKII CLSRYFTMST GAKGNGKKAR RKERINMLSH NRGGAGCSTS
501: SSSETSTVYA SLEDRSSGRS ILEVYSSAVR WRQISEPCDP VVWVNKLSEE FNSGFGSDTP MVLGQAKVVR YFPNYERTLN LAKTIIKVRD AYLTQ
101: GNGSAYKEKE NVKSSSQING SYESCNGSDL HDNLSESSVR LGDLSIIGDK LSSKPGSITK LSLKDEARCG VSGRTKINKK CTIARISETH SISVDFRISR
201: GIAQVNEGHY MKAISIFDKA LIGRGTAYAF QRELENAITD FTKAIESNPA ACEAWKRRGQ ARAALGEFAE VSGSKSSLLL EEAHSKSIQL DSNYLEAWLH
301: LAQHYQELAD HHKAMECTEH ALQVNYRMLH YPVLTRVWKA YHLRGLAFHG LGEHRKAIQE LSIGLSIENS IECLYLRGSC YHAVGEYRDA VKDYDATVDV
401: ELDAVEKFVL QCLAFYQVPR DVFFVDNPEK EIALYTASKA SSEFSCFDID GDLDQMFKII CLSRYFTMST GAKGNGKKAR RKERINMLSH NRGGAGCSTS
501: SSSETSTVYA SLEDRSSGRS ILEVYSSAVR WRQISEPCDP VVWVNKLSEE FNSGFGSDTP MVLGQAKVVR YFPNYERTLN LAKTIIKVRD AYLTQ
001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKP
101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKP
Arabidopsis Description
SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.