Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75658 | Canola | cytosol | 89.25 | 89.51 |
| CDX72630 | Canola | mitochondrion | 8.41 | 80.37 |
| AT4G37460.1 | Thale cress | cytosol | 82.5 | 80.23 |
| CDY06838 | Canola | cytosol | 5.87 | 72.29 |
| CDY29552 | Canola | plasma membrane | 15.64 | 71.11 |
| CDX72631 | Canola | cytosol, endoplasmic reticulum | 36.36 | 62.52 |
| VIT_07s0129g00540.t01 | Wine grape | cytosol | 64.52 | 61.8 |
| KRH04486 | Soybean | cytosol | 61.97 | 60.84 |
| Solyc02g092780.1.1 | Tomato | nucleus | 62.66 | 60.76 |
| KRH77069 | Soybean | cytosol | 62.07 | 60.65 |
| KRH58036 | Soybean | cytosol | 61.78 | 60.19 |
| TraesCS2B01G279000.1 | Wheat | cytosol | 53.67 | 54.46 |
| TraesCS2D01G260800.1 | Wheat | cytosol | 53.67 | 54.46 |
| KXG34268 | Sorghum | cytosol, mitochondrion | 53.76 | 54.29 |
| TraesCS2A01G263200.1 | Wheat | cytosol, mitochondrion | 53.37 | 54.17 |
| Os07t0113700-01 | Rice | cytosol | 53.47 | 54.1 |
| HORVU2Hr1G063340.8 | Barley | plastid | 53.47 | 52.39 |
| KRH28408 | Soybean | cytosol | 34.02 | 50.8 |
| Zm00001d007938_P003 | Maize | cytosol, mitochondrion | 52.3 | 50.76 |
| CDY06839 | Canola | cytosol | 4.2 | 44.79 |
| GSMUA_Achr5P01500_001 | Banana | cytosol | 9.29 | 32.65 |
| TraesCS2B01G273000.1 | Wheat | plastid | 3.81 | 28.89 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:A0A078BZA4 | EnsemblPlants:CDX69309 | ProteinID:CDX69309 | ProteinID:CDX69309.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00131140001 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | PFAM:PF00515 | PFAM:PF13181 | PFAM:PF13432 | PFscan:PS50005 | PFscan:PS50293 |
| PANTHER:PTHR44749 | SMART:SM00028 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI0004EDE6AC | SEG:seg | : | : |
Description
BnaC01g01440D
Coordinates
chrLK031789:-:4059238..4065636
Molecular Weight (calculated)
114475.0 Da
IEP (calculated)
6.549
GRAVY (calculated)
-0.386
Length
1023 amino acids
Sequence
(BLAST)
(BLAST)
0001: METAAAASER VELAKHCSSR NWSKAIRVLD SLLAKQCSIL DICNRAFCYN QLELHKHVIK DCDKALQLEP CAIQAYLLKG RALLALGRKQ EALLVLEQGY
0101: NIALQQTSDV KQLLEFDELL NAARPGIDVT LNHLAAETTG QETPVSSISS CATENSDEKV PSSMTVTESG ACSNGNTHES SRELGEESKI NGVPNDASKQ
0201: SGGASESRNG LAYKEKENVK SGSQINGSSS KPCNGSDLRD DLSETSDRLG DLSKCTIARI SETHSISVDF RLSRGIAQVN EGNYMKAISI FDKVLKEEPT
0301: YPEALIGRGT AYAFQRDLEN AIDDFTMAIQ SNPAAGEAWK RRGQARAALG EFAEAVEDLT RALELEPKSP DILHERGIIN FRSKDFTAAV KDLSICLKQE
0401: KDNKSAYTYL GLAFASLGEY TKAEEAHLKS IQLDSNYLEA WLHLAQFYQE LADHSKALEC IDQVLQVDNR VWKAYHLRGL VFHGLGEHRK AIQELSIGLS
0501: IESSIECLYL RGSCHHAVGE YREAVKDYDA TVDVELDAVE KFVLQCLAFY QKELALYTAS KVSSEFFCFD IDGDIDPMFK EYWCKRLHPK DVCEKVYRQP
0601: PLRESLKKGK LKKQDLAITK PKANLLRFTD MIGKKIQYFC PGFLPNRRQH RMAGLAVLEI AQKVSKAWRI EWRNSNKGMA KNGKKNRRRE RINMLSQNRG
0701: GAGCSTSTSS ETSTGYASLE DRSSGRSILS WQDVYSSAVR WRQISEPCDP VVWVNKLSEE FNSGFGSHTP MVLGQAKVIR YFPNYERTLN LTKTIIKEKL
0801: CVRSKADKVI DLSKDDKIEE IMRAETCEEL HKIVGEDFWV ATWCHSTAFE GKRLEGTRIT CIRKPGSLGY DFAIRTPCTP ARWSDFDEEM TSAWEVLCNA
0901: YCGENYGSTN LQALETVRDA ILRMTYYWYN FMPLARGTAV TGFVVLLGLL LAANMEFTES IPKGLQIDWE AILSVEPDSF VGSVKSWLYP SLKINTSWKD
1001: HPEVSSAFST TGSVVAALSS YND
0101: NIALQQTSDV KQLLEFDELL NAARPGIDVT LNHLAAETTG QETPVSSISS CATENSDEKV PSSMTVTESG ACSNGNTHES SRELGEESKI NGVPNDASKQ
0201: SGGASESRNG LAYKEKENVK SGSQINGSSS KPCNGSDLRD DLSETSDRLG DLSKCTIARI SETHSISVDF RLSRGIAQVN EGNYMKAISI FDKVLKEEPT
0301: YPEALIGRGT AYAFQRDLEN AIDDFTMAIQ SNPAAGEAWK RRGQARAALG EFAEAVEDLT RALELEPKSP DILHERGIIN FRSKDFTAAV KDLSICLKQE
0401: KDNKSAYTYL GLAFASLGEY TKAEEAHLKS IQLDSNYLEA WLHLAQFYQE LADHSKALEC IDQVLQVDNR VWKAYHLRGL VFHGLGEHRK AIQELSIGLS
0501: IESSIECLYL RGSCHHAVGE YREAVKDYDA TVDVELDAVE KFVLQCLAFY QKELALYTAS KVSSEFFCFD IDGDIDPMFK EYWCKRLHPK DVCEKVYRQP
0601: PLRESLKKGK LKKQDLAITK PKANLLRFTD MIGKKIQYFC PGFLPNRRQH RMAGLAVLEI AQKVSKAWRI EWRNSNKGMA KNGKKNRRRE RINMLSQNRG
0701: GAGCSTSTSS ETSTGYASLE DRSSGRSILS WQDVYSSAVR WRQISEPCDP VVWVNKLSEE FNSGFGSHTP MVLGQAKVIR YFPNYERTLN LTKTIIKEKL
0801: CVRSKADKVI DLSKDDKIEE IMRAETCEEL HKIVGEDFWV ATWCHSTAFE GKRLEGTRIT CIRKPGSLGY DFAIRTPCTP ARWSDFDEEM TSAWEVLCNA
0901: YCGENYGSTN LQALETVRDA ILRMTYYWYN FMPLARGTAV TGFVVLLGLL LAANMEFTES IPKGLQIDWE AILSVEPDSF VGSVKSWLYP SLKINTSWKD
1001: HPEVSSAFST TGSVVAALSS YND
0001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
Arabidopsis Description
SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.