CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72631	Canola	cytosol, endoplasmic reticulum	30.21	4.87
CDX69309	Canola	cytosol	44.79	4.2
CDX75658	Canola	cytosol	43.75	4.12
AT4G37460.1	Thale cress	cytosol	42.71	3.9
VIT_07s0129g00540.t01	Wine grape	cytosol	36.46	3.28
Solyc02g092780.1.1	Tomato	nucleus	35.42	3.22
TraesCS2D01G260800.1	Wheat	cytosol	32.29	3.08
TraesCS2B01G279000.1	Wheat	cytosol	32.29	3.08
TraesCS2A01G263200.1	Wheat	cytosol, mitochondrion	32.29	3.08
KRH04486	Soybean	cytosol	33.33	3.07
KRH77069	Soybean	cytosol	33.33	3.06
KRH58036	Soybean	cytosol	33.33	3.05
Os07t0113700-01	Rice	cytosol	31.25	2.97
KXG34268	Sorghum	cytosol, mitochondrion	31.25	2.96
Zm00001d007938_P003	Maize	cytosol, mitochondrion	31.25	2.85
HORVU2Hr1G063340.8	Barley	plastid	30.21	2.78
CDX72630	Canola	mitochondrion	2.08	1.87
GSMUA_Achr5P01500_001	Banana	cytosol	4.17	1.37
KRH28408	Soybean	cytosol	9.38	1.31
CDY06838	Canola	cytosol	1.04	1.2
CDY29552	Canola	plasma membrane	2.08	0.89
TraesCS2B01G273000.1	Wheat	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06839	EnsemblPlantsGene:GSBRNA2T00123106001	ProteinID:CDY06839	ProteinID:CDY06839.1	SUPFAM:SSF48439	UniParc:UPI0004EF1CAB
MapMan:35.2	:	:	:	:	:

Description

BnaC01g09380D

Coordinates

chrLK031973:+:735253..736129

Molecular Weight (calculated)

11419.8 Da

IEP (calculated)

7.000

GRAVY (calculated)

0.015

Length

96 amino acids

Sequence
(BLAST)

1: MYNYACIKAL ECIDQVLQVD NRVWKAYHFR GFVFHGLGEH RSPCEQKNVL IETENFDGHI HLGFYLQGWS LKQCYYLIFT CSCFAILIFK ESIEMR

Best Arabidopsis Sequence Match ( AT4G37460.2 )
(BLAST)

001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKP

Arabidopsis Description

SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.