CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017825.1-P	Field mustard	plasma membrane	99.56	99.56
CDX72630	Canola	mitochondrion	38.22	80.37
TraesCS2B01G273000.1	Wheat	plastid	12.44	20.74
CDX75658	Canola	cytosol	75.11	16.57
CDX69309	Canola	cytosol	71.11	15.64
KRH28408	Soybean	cytosol	42.67	14.01
VIT_07s0129g00540.t01	Wine grape	cytosol	63.11	13.3
KRH77069	Soybean	cytosol	60.44	12.99
Solyc02g092780.1.1	Tomato	nucleus	60.44	12.89
KRH04486	Soybean	cytosol	59.56	12.86
KRH58036	Soybean	cytosol	59.11	12.67
TraesCS2B01G279000.1	Wheat	cytosol	52.0	11.61
TraesCS2D01G260800.1	Wheat	cytosol	52.0	11.61
TraesCS2A01G263200.1	Wheat	cytosol, mitochondrion	51.11	11.41
Os07t0113700-01	Rice	cytosol	51.11	11.37
KXG34268	Sorghum	cytosol, mitochondrion	51.11	11.35
Zm00001d007938_P003	Maize	cytosol, mitochondrion	52.89	11.29
HORVU2Hr1G063340.8	Barley	plastid	51.56	11.11
CDX72631	Canola	cytosol, endoplasmic reticulum	20.44	7.73
GSMUA_Achr5P01500_001	Banana	cytosol	4.0	3.09
CDY06839	Canola	cytosol	0.89	2.08
CDY06838	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY29552	EnsemblPlantsGene:GSBRNA2T00043265001	Gene3D:1.25.40.10	GO:A0A078GWL6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR44749	ProteinID:CDY29552	ProteinID:CDY29552.1	SEG:seg	SUPFAM:SSF48452	TMHMM:TMhelix
UniParc:UPI0004EDB12A	UniProt:A0A078GWL6	MapMan:35.1	:	:	:

Description

BnaA03g53970DBnaA03g53970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWL6]

Coordinates

chrLK032239:-:171096..173271

Molecular Weight (calculated)

24787.7 Da

IEP (calculated)

5.075

GRAVY (calculated)

0.016

Length

225 amino acids

Sequence
(BLAST)

001: MNYSKLQDEI LIMLPLASCA SSDEKIGNQI NGSYESCSKL SLKAEARCGV CGETKTIARI SETQSISVDF PLSRGIAQVL KEEPTYPEAL IGRGTAYASQ
101: RELENAIADF TKALCNVYCR DAILRMTYYW YNFMPLARGT AVTGFVVLLG LLLAANMEFT ESIPKGLQIY WEAILNVEPG SFVGSVKSWL YPSLKINTSW
201: RDRPEVSSAF STTRSVVAAL STCND

Best Arabidopsis Sequence Match ( AT4G37460.1 )
(BLAST)

0001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND

Arabidopsis Description

SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.