CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75658	Canola	cytosol	72.29	5.88
CDX69309	Canola	cytosol	72.29	5.87
KRH28408	Soybean	cytosol	46.99	5.69
AT4G37460.1	Thale cress	cytosol	62.65	4.94
Os07t0113700-01	Rice	cytosol	56.63	4.65
TraesCS2D01G260800.1	Wheat	cytosol	53.01	4.37
TraesCS2B01G279000.1	Wheat	cytosol	53.01	4.37
KXG34268	Sorghum	cytosol, mitochondrion	53.01	4.34
TraesCS2A01G263200.1	Wheat	cytosol, mitochondrion	51.81	4.27
HORVU2Hr1G063340.8	Barley	plastid	53.01	4.21
Zm00001d007938_P003	Maize	cytosol, mitochondrion	53.01	4.17
KRH04486	Soybean	cytosol	51.81	4.13
KRH77069	Soybean	cytosol	51.81	4.11
KRH58036	Soybean	cytosol	51.81	4.1
Solyc02g092780.1.1	Tomato	nucleus	51.81	4.08
VIT_07s0129g00540.t01	Wine grape	cytosol	51.81	4.03
TraesCS2B01G273000.1	Wheat	plastid	4.82	2.96
CDX72631	Canola	cytosol, endoplasmic reticulum	13.25	1.85
GSMUA_Achr5P01500_001	Banana	cytosol	6.02	1.72
CDY06839	Canola	cytosol	1.2	1.04
CDY29552	Canola	plasma membrane	0.0	0.0
CDX72630	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06838	EnsemblPlantsGene:GSBRNA2T00123105001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44749	PFAM:PF13414
PFscan:PS50293	ProteinID:CDY06838	ProteinID:CDY06838.1	SUPFAM:SSF48452	UniParc:UPI0004EDCD34	MapMan:35.1

Description

BnaC01g09370D

Coordinates

chrLK031973:+:734440..735149

Molecular Weight (calculated)

9305.1 Da

IEP (calculated)

8.234

GRAVY (calculated)

-0.208

Length

83 amino acids

Sequence
(BLAST)

1: MSNGLIRSAR AALGEFAEAV EALTRALELE PKSPDILHER GKYFNFRSKD FTAAVKDLSI CLKQEKDNKS AHTLFGTIFC ISW

Best Arabidopsis Sequence Match ( AT4G37460.2 )
(BLAST)

001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKP

Arabidopsis Description

SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.