Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
- extracellular 3
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P01510_001 | Banana | cytosol | 1.05 | 5.38 |
| GSMUA_Achr5P01520_001 | Banana | cytosol | 2.3 | 4.98 |
| GSMUA_Achr5P01500_001 | Banana | cytosol | 0.84 | 1.37 |
| TraesCS2B01G273000.1 | Wheat | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P01530_001 | EnsemblPlants:GSMUA_Achr5T01530_001 | EnsemblPlantsGene:GSMUA_Achr5G01530_001 | PANTHER:PTHR44749 | UniParc:UPI0002959F04 | UniProt:M0SUT2 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative Tetratricopeptide repeat protein 13 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01530_001]
Coordinates
chr5:+:887416..898251
Molecular Weight (calculated)
54287.0 Da
IEP (calculated)
8.422
GRAVY (calculated)
-0.248
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLLGWQYFL PISKELALYT ASKVNSEFCW FDIDGDIDPL FKEYWCKRLH PQYVCERVYR QPPLKESLKK GRLKKQDFVV TKHKQILLHV ADVIGQKIQY
101: DCPGFMQNNR QYRMAGLAAI EVAQKVAKYW RFLRNANKNG KKTRKKERLN IVSQNRGGAC CTTSGLSETS SYGSNEDKYA SARSLSWQDV YSVAVKWRQI
201: SEPCDPVVWV NKLSEEFNSG FGSHTPMLLG QAKVVRYYPN YQRIFDVAKS IIKDIKYVNN AADKIIDLSG AGKLQKIIHA GSCSDLYGVI DENFWVGTTC
301: ESTAFEGKHL EGTRITLQKM DKIGFDFAIR TPCTPSRWDE YSEEMATAWE AICSAYTSEI YSSTDLTMLE NVKDAILRMT YYWYNFMPLS RGSAVVGYIV
401: LLGLFLAANM EVTGSIPPGV QVDWEAILSP NPDVFLSSIK PWLYPSVRIN TAWKDYPDIT LAFATTGSII AALSSYDA
101: DCPGFMQNNR QYRMAGLAAI EVAQKVAKYW RFLRNANKNG KKTRKKERLN IVSQNRGGAC CTTSGLSETS SYGSNEDKYA SARSLSWQDV YSVAVKWRQI
201: SEPCDPVVWV NKLSEEFNSG FGSHTPMLLG QAKVVRYYPN YQRIFDVAKS IIKDIKYVNN AADKIIDLSG AGKLQKIIHA GSCSDLYGVI DENFWVGTTC
301: ESTAFEGKHL EGTRITLQKM DKIGFDFAIR TPCTPSRWDE YSEEMATAWE AICSAYTSEI YSSTDLTMLE NVKDAILRMT YYWYNFMPLS RGSAVVGYIV
401: LLGLFLAANM EVTGSIPPGV QVDWEAILSP NPDVFLSSIK PWLYPSVRIN TAWKDYPDIT LAFATTGSII AALSSYDA
0001: MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
0101: KSALQQTADV KQLLELEELL KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ SKIVSFSKVA SKASKQSDGN
0201: SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
0301: LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD
0401: VLHERGIVNF KSKDFTAAVK DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL ADHCKALECI EQVLQVDNRV
0501: WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
0601: DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE
0701: WRNSTKGTTK NGKKNRRRER TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV VWVNKLSEEF NSGFGSHTPM
0801: VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
0901: FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA
1001: ILNVEPGSFV DSVKSWLYPS LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
Arabidopsis Description
SRFR1SRFR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V335]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.