CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69309
CDX73815
CDX75658
CDX91605
CDY00493
CDY00784
CDY06838
CDY06839
CDY27839
CDY40362
CDY46930
CDY50297
CDY50531
CDY52661

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	CDX73815	AT3G12580.1	18065690
AT4G11260.1	CDY00784	AT3G12580.1	18065690
AT4G11260.1	CDY50531	AT3G12580.1	18065690
AT4G11260.1	CDY52661	AT3G12580.1	18065690
AT4G11260.1	CDX69309	AT4G37460.1	21798944
AT4G11260.1	CDX75658	AT4G37460.1	21798944
AT4G11260.1	CDY06838	AT4G37460.1	21798944
AT4G11260.1	CDY06839	AT4G37460.1	21798944
AT4G11260.1	CDY40362	AT5G02500.1	18065690
AT4G11260.1	CDX91605	AT5G51700.1	11847307
AT4G11260.1	CDY00493	AT5G51700.1	11847307
AT4G11260.1	CDY46930	AT5G51700.1	11847307
AT4G11260.1	CDX91605	AT5G51700.1	18065690
AT4G11260.1	CDY00493	AT5G51700.1	18065690
AT4G11260.1	CDY46930	AT5G51700.1	18065690
AT4G11260.1	CDY27839	AT5G52640.1	18065690
AT4G11260.1	CDY50297	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05137	Canola	cytosol	93.04	93.04
Bra000741.1-P	Field mustard	cytosol	91.36	91.62
CDX86798	Canola	cytosol	88.86	89.36
CDY13243	Canola	cytosol	87.19	87.92
AT4G11260.1	Thale cress	cytosol	84.96	85.2
CDX94203	Canola	cytosol	74.93	78.2
CDY10946	Canola	cytosol	74.09	77.33
CDY10894	Canola	cytosol	72.7	73.52
CDY44117	Canola	cytosol	72.14	72.55
Os01t0624500-01	Rice	cytosol, nucleus	23.4	71.19
CDY28656	Canola	cytosol	13.65	70.0
CDY43481	Canola	cytosol	13.65	70.0
CDY10892	Canola	endoplasmic reticulum, golgi	36.77	69.84
Solyc03g007670.2.1	Tomato	cytosol, extracellular	66.3	64.32
KRH38332	Soybean	cytosol, nucleus	64.07	64.07
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	65.74	63.78
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	39.0	63.64
KRH08815	Soybean	nucleus	63.23	63.23
VIT_16s0050g01510.t01	Wine grape	cytosol	62.67	62.33
KRH77588	Soybean	cytosol	62.67	62.33
Solyc06g036410.1.1	Tomato	cytosol	11.42	62.12
GSMUA_Achr7P10850_001	Banana	cytosol	62.95	61.58
KRH35228	Soybean	cytosol	60.45	60.78
Zm00001d044172_P002	Maize	extracellular	61.0	60.66
CDY63435	Canola	cytosol, mitochondrion, nucleus	49.58	60.54
EES01101	Sorghum	cytosol	61.28	60.44
Zm00001d011401_P001	Maize	extracellular	60.45	60.11
PGSC0003DMT400074364	Potato	cytosol	61.84	59.84
KRH27885	Soybean	cytosol	61.84	59.36
HORVU3Hr1G055920.7	Barley	cytosol	60.45	58.18
GSMUA_Achr7P14290_001	Banana	cytosol	59.89	58.11
GSMUA_Achr4P15560_001	Banana	cytosol	59.61	57.99
Solyc06g036420.1.1	Tomato	cytosol	47.63	57.77
TraesCS3B01G255300.1	Wheat	cytosol	55.99	53.32
TraesCS3D01G227500.3	Wheat	golgi	60.17	51.06
VIT_02s0025g00450.t01	Wine grape	cytosol	45.96	48.82
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.47	46.58
CDY71639	Canola	cytosol, plastid	13.93	42.02
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.89	29.64

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	EnsemblPlants:CDX90794	ProteinID:CDX90794	ProteinID:CDX90794.1
InterPro:CS_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151498001	InterPro:HSP20-like_chaperone
InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PFscan:PS51048
PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EEE18E	SEG:seg

Description

BnaA03g24740D

Coordinates

chrLK031864:-:564765..567194

Molecular Weight (calculated)

39680.1 Da

IEP (calculated)

4.721

GRAVY (calculated)

-0.422

Length

359 amino acids

Sequence
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPSCASFFA DRAQANIKLL NFTAEAVADA NKAIELEPTL AKAYLRKGTA CMKLEEYATA KAALEKGASV
101: APNESKFEKM IDECNLLIAE EEKDLVQQVP PTLPSSSTTP LATAADAPPV PSPAPPAKPM FRHEFYQKPE EVVVTIFAKG IPKQNVNVEF GDQILSVVID
201: VAGEEAYHFQ PRLFGKIIPE KCRYEVLSTK VEIRLAKAEI VTWASLEYGK GQALLPKPNV ASAVSQRPVY PSSKPGKDWD KLEAEVKKQE KDEKLDGDAA
301: MNKFFSDIYQ SADEDMRRAM NKSFAESNGT VLSTNWKEVG TKKVESTPPD GMELKKWEY

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.