CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91395
KRH01631
KRH04486
KRH08858
KRH28408
KRH35422
KRH38373
KRH58036
KRH70484
KRH77069

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	KRH01631	AT3G12580.1	18065690
AT4G11260.1	KRH70484	AT3G12580.1	18065690
AT4G11260.1	KRH04486	AT4G37460.1	21798944
AT4G11260.1	KRH28408	AT4G37460.1	21798944
AT4G11260.1	KRH58036	AT4G37460.1	21798944
AT4G11260.1	KRH77069	AT4G37460.1	21798944
AT4G11260.1	KRG91395	AT5G51700.1	11847307
AT4G11260.1	KRH35422	AT5G51700.1	11847307
AT4G11260.1	KRG91395	AT5G51700.1	18065690
AT4G11260.1	KRH35422	AT5G51700.1	18065690
AT4G11260.1	KRH08858	AT5G52640.1	18065690
AT4G11260.1	KRH38373	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08815	Soybean	nucleus	73.39	72.98
KRH38332	Soybean	cytosol, nucleus	72.83	72.42
Os01t0624500-01	Rice	cytosol, nucleus	23.81	72.03
VIT_16s0050g01510.t01	Wine grape	cytosol	69.75	68.98
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	66.67	64.32
PGSC0003DMT400074364	Potato	cytosol	65.27	62.8
KRH77588	Soybean	cytosol	63.31	62.6
Zm00001d044172_P002	Maize	extracellular	62.75	62.05
GSMUA_Achr7P10850_001	Banana	cytosol	63.59	61.85
EES01101	Sorghum	cytosol	63.03	61.81
GSMUA_Achr4P15560_001	Banana	cytosol	63.87	61.79
AT4G23570.3	Thale cress	cytosol	60.5	61.54
Bra019295.1-P	Field mustard	cytosol	58.82	61.22
CDY10946	Canola	cytosol	58.82	61.05
Zm00001d011401_P001	Maize	extracellular	61.62	60.94
CDX94203	Canola	cytosol	58.54	60.76
CDY13243	Canola	cytosol	60.5	60.67
Bra035239.1-P	Field mustard	cytosol	60.22	60.56
CDX90794	Canola	cytosol	60.78	60.45
GSMUA_Achr7P14290_001	Banana	cytosol	62.47	60.27
CDX86798	Canola	cytosol	60.22	60.22
KRH27885	Soybean	cytosol	63.03	60.16
CDY05137	Canola	cytosol	60.22	59.89
AT4G11260.1	Thale cress	cytosol	59.94	59.78
Bra000741.1-P	Field mustard	cytosol	59.94	59.78
HORVU3Hr1G055920.7	Barley	cytosol	61.9	59.25
CDY44117	Canola	cytosol	57.7	57.7
Bra013710.1-P	Field mustard	cytosol	51.82	57.45
CDY10894	Canola	cytosol	56.86	57.18
CDY10892	Canola	endoplasmic reticulum, golgi	29.69	56.08
CDY43481	Canola	cytosol	10.92	55.71
CDY28656	Canola	cytosol	10.92	55.71
TraesCS3B01G255300.1	Wheat	cytosol	57.14	54.11
TraesCS3D01G227500.3	Wheat	golgi	61.34	51.77
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	31.09	50.45
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.8	47.95
Bra019498.1-P	Field mustard	cytosol, plastid	27.17	43.89
CDY63435	Canola	cytosol, mitochondrion, nucleus	34.73	42.18
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	22.41	31.62
CDY71639	Canola	cytosol, plastid	10.36	31.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	EMBL:ACUP02006660	InterPro:CS_dom	EnsemblPlantsGene:GLYMA_10G230000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699
InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K7LKZ6	EnsemblPlants:KRH35228
ProteinID:KRH35228	ProteinID:KRH35228.1	PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFscan:PS50005
PFscan:PS50293	PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000233C64F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:46013366..46017442

Molecular Weight (calculated)

39833.1 Da

IEP (calculated)

4.668

GRAVY (calculated)

-0.504

Length

357 amino acids

Sequence
(BLAST)

001: MASDLELKAK EAFEDDNYDL AYDLLTQAIG LSPNNADLYA DRAQVNIKVN NLTEAVSDAN KAIELNPSHS KAYLRKGTAC IKLEEYQTAK AALEMGASLA
101: PGDSKFTDLI KDCDELIAEE SGVIPIQEES TTQGAATKAV EAENDLPEPP TVTVVKPKYR HEFYQKPDEM VITIFAKGIP RDSITVDFGE QILSVTINIP
201: CKDAYVFQPR LFGKIIPSKC RYEVLSTKIE ICLAKADHIQ WTSLEFNKGS TVAQRFSVLP VARGEKPTYP SSKPKITDWD KLEAQVKKEE KEEKLDGDAA
301: LNKFFRDIYQ DADEDTRRAM SKSFVESNGT VLSTNWKEVG SMKVQESPPD GMELKKW

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.