Factsheet for VIT_12s0035g01560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00280.t01
VIT_07s0129g00540.t01
VIT_16s0022g02040.t01
VIT_16s0050g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	VIT_07s0129g00540.t01	AT4G37460.1	21798944
AT4G11260.1	VIT_16s0022g02040.t01	AT5G51700.1	11847307
AT4G11260.1	VIT_16s0022g02040.t01	AT5G51700.1	18065690
AT4G11260.1	VIT_02s0025g00280.t01	AT5G52640.1	18065690
AT4G11260.1	VIT_16s0050g01150.t01	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0624500-01	Rice	cytosol, nucleus	21.74	46.61
KRG94038	Soybean	cytosol, mitochondrion, nucleus	11.46	39.73
CDY43481	Canola	cytosol	7.51	27.14
CDY28656	Canola	cytosol	7.51	27.14
CDY10892	Canola	endoplasmic reticulum, golgi	20.16	26.98
VIT_16s0050g01510.t01	Wine grape	cytosol	34.39	24.1
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	20.16	23.18
Bra019498.1-P	Field mustard	cytosol, plastid	19.76	22.62
KRH35228	Soybean	cytosol	31.62	22.41
Solyc06g036420.1.1	Tomato	cytosol	26.09	22.3
KRH38332	Soybean	cytosol, nucleus	30.83	21.73
GSMUA_Achr4P15560_001	Banana	cytosol	31.62	21.68
KRH08815	Soybean	nucleus	30.43	21.45
AT4G23570.3	Thale cress	cytosol	29.25	21.08
Solyc03g007670.2.1	Tomato	cytosol, extracellular	30.83	21.08
Bra000741.1-P	Field mustard	cytosol	29.64	20.95
CDY05137	Canola	cytosol	29.64	20.89
CDX90794	Canola	cytosol	29.64	20.89
Bra035239.1-P	Field mustard	cytosol	29.25	20.85
CDX86798	Canola	cytosol	29.25	20.73
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	30.04	20.54
GSMUA_Achr7P14290_001	Banana	cytosol	30.04	20.54
CDY13243	Canola	cytosol	28.85	20.51
Zm00001d011401_P001	Maize	extracellular	29.25	20.5
Bra019295.1-P	Field mustard	cytosol	27.67	20.41
CDY10946	Canola	cytosol	27.67	20.35
Zm00001d044172_P002	Maize	extracellular	28.85	20.22
GSMUA_Achr7P10850_001	Banana	cytosol	29.25	20.16
AT4G11260.1	Thale cress	cytosol	28.46	20.11
CDX94203	Canola	cytosol	27.27	20.06
EES01101	Sorghum	cytosol	28.85	20.05
HORVU3Hr1G055920.7	Barley	cytosol	28.85	19.57
CDY10894	Canola	cytosol	26.88	19.15
Bra013710.1-P	Field mustard	cytosol	23.72	18.63
PGSC0003DMT400074364	Potato	cytosol	27.27	18.6
TraesCS3B01G255300.1	Wheat	cytosol	27.67	18.57
CDY44117	Canola	cytosol	25.3	17.93
CDY63435	Canola	cytosol, mitochondrion, nucleus	20.55	17.69
TraesCS3D01G227500.3	Wheat	golgi	28.46	17.02
VIT_02s0025g00450.t01	Wine grape	cytosol	19.76	14.79
CDY71639	Canola	cytosol, plastid	4.74	10.08

Protein Annotations

ArrayExpress:VIT_12s0035g01560	EMBL:FN595990	EnsemblPlants:VIT_12s0035g01560.t01	EnsemblPlantsGene:VIT_12s0035g01560	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR007699	InterPro:SGS_dom	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	PFAM:PF05002
PFscan:PS51048	ProteinID:CBI29661	ProteinID:CBI29661.3	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001BE376B
UniProt:D7TGN9	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr12:-:21445509..21449885

Molecular Weight (calculated)

29475.9 Da

IEP (calculated)

7.748

GRAVY (calculated)

-0.351

Length

253 amino acids

Sequence
(BLAST)

001: MRDEIHEVLL NLLELERESL YLWLGGKGLT EPPRDEEWEK ASEVHLMNNK LSELPKSPDC PQLRALLHLL LSLINSILKI QFLFLYSVTI GEEHIKELLC
101: DMCSSDKTQR GKLNNRFVAG VASQRPTYPS SKTKMVDWDK LEAQVKKEEK EEKLDGDAAL NRFFRDIYPD ADEDTRMAMQ KSFVRLQNRR QCCGQTGRKF
201: DRRRLREALL MAWRIGNGST EFSPLNCVKY FKYAILLFCS IDMILGFFFL LIA

Best Arabidopsis Sequence Match ( AT4G23570.3 )
(BLAST)

001: MAKELADKAK EAFVDDDFDV AVDLYSKAID LDPNCAEFFA DRAQAYIKLE SFTAEAVADA NKAIELDPSL TKAYLRKGTA CMKLEEYRTA KTALEKGASI
101: TPSESKFKKL IDECNFLITE EEKDLVQPVP STLPSSVTAP PVSELDVTPT AKYRHEYYQK PEEVVVTVFA KGIPKQNVNI DFGEQILSVV IEVPGEDAYY
201: LQPRLFGKII PDKCKYEVLS TKIEICLAKA DIITWASLEH GKGPAVLPKP NVSSEVSQRP AYPSSKKVKD WDKLEAEVKK QEKDEKLEGD AALNKFFREI
301: YQNADEDMRR AMSKSFVESN GTVLSTNWQE VGTKTIESTP PDGMELKKWE I

Arabidopsis Description

SGT1Aphosphatase-related [Source:TAIR;Acc:AT4G23570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.