Factsheet for VIT_16s0050g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00450.t01
VIT_04s0008g01110.t01
VIT_12s0035g01560.t01
VIT_13s0064g00580.t01
VIT_16s0022g02040.t01
VIT_16s0050g01510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	VIT_04s0008g01110.t01	AT2G26150.1	19366428
AT5G52640.1	VIT_13s0064g00580.t01	AT3G21640.1	12410806
AT5G52640.1	VIT_02s0025g00450.t01	AT4G11260.1	18065690
AT5G52640.1	VIT_12s0035g01560.t01	AT4G11260.1	18065690
AT5G52640.1	VIT_16s0050g01510.t01	AT4G11260.1	18065690
AT5G52640.1	VIT_16s0022g02040.t01	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00280.t01	Wine grape	cytosol	94.03	94.17
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	93.32	93.99
PGSC0003DMT400024594	Potato	cytosol	93.89	93.89
KRH38373	Soybean	nucleus	92.9	93.56
KRH08858	Soybean	nucleus	92.05	92.7
AT5G52640.1	Thale cress	cytosol	92.05	92.57
CDY27839	Canola	cytosol	92.19	92.06
GSMUA_Achr8P19130_001	Banana	cytosol	75.71	91.58
TraesCS2D01G033200.2	Wheat	golgi	89.77	88.76
TraesCS2A01G033700.1	Wheat	plastid	88.92	88.54
TraesCS2B01G047400.1	Wheat	cytosol	89.35	88.34
Zm00001d024903_P001	Maize	plasma membrane	89.2	87.96
EES11741	Sorghum	cytosol	89.35	87.85
VIT_00s0194g00030.t01	Wine grape	cytosol	86.65	87.27
Os04t0107900-02	Rice	cytosol	30.68	86.75
VIT_19s0015g01090.t01	Wine grape	cytosol	86.22	86.22
VIT_00s2341g00010.t01	Wine grape	cytosol	5.97	85.71
Bra003119.1-P	Field mustard	plastid	73.01	84.54
CDY50297	Canola	plastid	74.86	82.86
VIT_00s1569g00010.t01	Wine grape	cytosol	11.36	76.19
VIT_14s0083g01230.t01	Wine grape	cytosol	4.97	64.81
VIT_13s0106g00410.t01	Wine grape	cytosol	10.09	58.2
VIT_08s0007g05760.t01	Wine grape	cytosol	4.97	50.0
VIT_18s0001g14500.t01	Wine grape	endoplasmic reticulum	51.99	44.74
VIT_05s0062g00690.t01	Wine grape	cytosol	14.63	42.56
VIT_00s0131g00250.t01	Wine grape	cytosol	12.36	41.43
VIT_01s0010g00680.t01	Wine grape	plastid	46.31	41.16
VIT_12s0057g00670.t01	Wine grape	cytosol	44.6	37.07
VIT_05s0094g00110.t01	Wine grape	nucleus, peroxisome, plastid	12.07	31.72

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:100257736	wikigene:100257736	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10
Gene3D:3.30.70.2140	Gene3D:3.40.50.11260	EMBL:AM423851	ProteinID:CAN73318	ProteinID:CAN73318.1	ProteinID:CCB47834
ProteinID:CCB47834.1	ncoils:Coil	UniProt:F6H6C3	EMBL:FN595243	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS
InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196	EntrezGene:LOC100257736	wikigene:LOC100257736
HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298
PANTHER:PTHR11528	PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211
SUPFAM:SSF55874	TIGR:TC52017	UniParc:UPI0001985B91	ArrayExpress:VIT_16s0050g01150	EnsemblPlantsGene:VIT_16s0050g01150	EnsemblPlants:VIT_16s0050g01150.t01
unigene:Vvi.24431	RefSeq:XP_002274022	RefSeq:XP_002274022.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:+:18054147..18057201

Molecular Weight (calculated)

80872.3 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.601

Length

704 amino acids

Sequence
(BLAST)

001: MADVQMGEAE TFAFQAEINQ LLSLIINTFY SNKEIFLREL ISNASDALDK IRFESLTDKS KLDAQPELFI RIVPDKVNKT LSIIDSGIGM TKADLVNNLG
101: TIARSGTKEF MEALQAGADV SMIGQFGVGF YSAYLVAEKV IVTTKHNDDE QYIWESQAGG SFTVTRDVSG EPLGRGTKIT LFLKDDQVEY LEERRIKDLV
201: KKHSEFISYP IYLWTEKTTE KEISDDEDDE PKKDEEGAVE EVDEEKETKS KKKKIKEVSH EWQLINKQKP IWLRKPEEIT KEEYASFYKS LTNDWEDYLA
301: VKHFSVEGQL EFKAILFVPK RAPFDLFDTR KKMNNIKLYV RRVFIMDNCE ELIPEYLGFV KGVVDSDDLP LNISREMLQQ NKILKVIRKN LVKKCIEMFN
401: EIAENKDDYS KFYDAFSKNL KLGIHEDSQN RAKLADLLRY YSTKSGEEMT SLKDYVTRMK EGQKDIYYIT GESKKAVENS PFLERLKKKG YEVLFMVDAI
501: DEYAVGQLKE YDGKKLVSAT KEGLKLDEES EEEKKKREEK KKSFENLCKT IKDILGDKVE KVVVSDRIVD SPCCLVTGEY GWTANMERIM KAQALRDSSM
601: GAYMSSKKTM EINPDNGIME ELRKRAEVDK NDKSVKDLVM LLYETALLTS GFSLDDPNTF AGRIHRMLKL GLSIDEGEEV GEEDADMPPL EEDGNEESKM
701: EEVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.