Factsheet for Solyc03g007890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
nucleus: 25464976
plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087470.2.1
Solyc03g007670.2.1
Solyc06g036410.1.1
Solyc06g036420.1.1
Solyc11g072290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	Solyc01g087470.2.1	AT3G21640.1	12410806
AT5G52640.1	Solyc03g007670.2.1	AT4G11260.1	18065690
AT5G52640.1	Solyc06g036410.1.1	AT4G11260.1	18065690
AT5G52640.1	Solyc06g036420.1.1	AT4G11260.1	18065690
AT5G52640.1	Solyc11g072290.1.1	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024594	Potato	cytosol	99.57	98.86
Solyc06g036290.2.1	Tomato	nucleus, plastid	83.26	95.88
KRH38373	Soybean	nucleus	93.85	93.85
KRH08858	Soybean	nucleus	93.71	93.71
VIT_16s0050g01150.t01	Wine grape	cytosol	93.99	93.32
VIT_02s0025g00280.t01	Wine grape	cytosol	93.56	93.03
AT5G52640.1	Thale cress	cytosol	92.56	92.43
CDY27839	Canola	cytosol	93.13	92.34
GSMUA_Achr8P19130_001	Banana	cytosol	76.68	92.1
TraesCS2A01G033700.1	Wheat	plastid	90.27	89.25
TraesCS2D01G033200.2	Wheat	golgi	90.41	88.76
EES11741	Sorghum	cytosol	90.7	88.55
Zm00001d024903_P001	Maize	plasma membrane	90.41	88.52
TraesCS2B01G047400.1	Wheat	cytosol	90.13	88.48
Solyc12g015880.1.1	Tomato	nucleus	87.12	87.12
Os04t0107900-02	Rice	cytosol	30.9	86.75
Solyc07g065840.2.1	Tomato	nucleus, plastid	86.55	86.55
Bra003119.1-P	Field mustard	plastid	73.53	84.54
CDY50297	Canola	plastid	75.25	82.7
Solyc04g081570.2.1	Tomato	plastid	51.65	44.46
Solyc05g010670.2.1	Tomato	plastid	46.92	41.68
Solyc07g047790.2.1	Tomato	mitochondrion, nucleus, plastid	45.06	39.67
Solyc04g081630.1.1	Tomato	cytosol	9.16	23.97

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009816
GO:GO:0009987	GO:GO:0051082	GO:GO:0061077	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C
InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196	UniProt:K4BEL1
HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298
PANTHER:PTHR11528	PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211
SUPFAM:SSF55874	EnsemblPlantsGene:Solyc03g007890.2	EnsemblPlants:Solyc03g007890.2.1	UniParc:UPI000276832C	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:2410871..2414110

Molecular Weight (calculated)

80275.6 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.610

Length

699 amino acids

Sequence
(BLAST)

001: MAEAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDAQ PELFIRLVPD KANKTLSIID SGVGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVIVTTK HNDDEQYVWE SQAGGSFTVT RDVSGEQLGR GTKITLFLKE DQLEYLEERR IKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDDEPKKDE EGAVEEVDED KEKEKGKKKK IKEVSHEWQL INKQKPIWLR KPEEITKEEY ASFYKSLTND WEDHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDSRKKMN NIKLYVRRVF IMDNCEELMP EYLGFVKGVV DSDDLPLNIS REMLQQNKIL KVIRKNLVKK CIEMFNEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRAKL ADLLRYHSTK SGDELTSLKD YVTRMKEGQK DIYYITGESK KAVENSPFLE RLKKKGYEVL YMVDAIDEYA
501: VGQLKEYDGK KLVSATKEGL KLDDDSEEEK KKKEEKKKSF ENLCKIIKDI LGDKVEKVVV SDRIVDSPCC LVTGEYGWTA NMERIMKAQA LRDTSMSSYM
601: SSKKTMEINP DNGIMEELRK RAEADQNDKS VKDLVLLLFE TALLTSGFSL DDPNTFAARI HRMLKLGLSI EEEEEGAGED ADMPALEEIG EESKMEEVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.